Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,102,408 – 7,102,506 |
Length | 98 |
Max. P | 0.667066 |
Location | 7,102,408 – 7,102,506 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 90.70 |
Mean single sequence MFE | -21.16 |
Consensus MFE | -16.58 |
Energy contribution | -17.38 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.58 |
Structure conservation index | 0.78 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.667066 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7102408 98 + 22224390 AACCCAUUUCGAGGCUGGACAGGCGACGACCCAUCUACCAUCGCCCUUGCCAUCUGCAGCCCAACCGGAUCCCCAUCCAGAGACCAUC---------CUCCAUAUCC ..........((((.(((...(((((.(..........).))))).((((.....)))).......((((....)))).....))).)---------)))....... ( -20.90) >DroSec_CAF1 93349 98 + 1 AACCCAUUUCGAGGCUGGACAGGCGACGACCCAUCUACCAUCGCCAUUGCCAUCUGCAUCCCAACCGGAUCCCCAUCCAGAGACCAUC---------CUCCAUAUCC ..........((((.(((...(((((.(..........).)))))..(((.....)))........((((....)))).....))).)---------)))....... ( -21.40) >DroSim_CAF1 93413 98 + 1 AACCCAUUUCGAGGCUGGACAGGCGACGACCCAUCUACCAUCGCCAUUGCCAUCUGCAGCCCAACCGGAUCCCCAUCCAGAGACCAUC---------UUCCAUAUCC ......((((..((.(((...(((((.(..........).))))).((((.....)))).))).))((((....)))).)))).....---------.......... ( -20.40) >DroEre_CAF1 95516 107 + 1 AACCCAUUUCGAGGCUGGACAGGCGACGACCCAUCUACCAUCGCCAUUGCCAUCUGCAGCCCAUCCGGAACCCCAUCCAGAGCCCAUGCUCCACAUCCUCCAUAUCC ..........(((((((((..(((((.(..........).))))).((((.....))))....)))))...........((((....)))).....))))....... ( -24.00) >DroYak_CAF1 96001 107 + 1 AACCCAUUUCGAGGCUGGACAGGCGACGACCCAUCUACCAUCGCCAUUGCCAUCUGCAGCCCAUCCGUAUCCCCAUUCAGCGACCAUCCUCCACAUUCUCCAUAUCC ..........((((.(((...(((((.(..........).))))).((((.....))))........................))).))))................ ( -19.10) >consensus AACCCAUUUCGAGGCUGGACAGGCGACGACCCAUCUACCAUCGCCAUUGCCAUCUGCAGCCCAACCGGAUCCCCAUCCAGAGACCAUC_________CUCCAUAUCC ......((((..((.(((...(((((.(..........).)))))..(((.....)))..))).))((((....)))).))))........................ (-16.58 = -17.38 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:06 2006