Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,093,576 – 7,093,668 |
Length | 92 |
Max. P | 0.500000 |
Location | 7,093,576 – 7,093,668 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 84.13 |
Mean single sequence MFE | -29.80 |
Consensus MFE | -22.16 |
Energy contribution | -23.18 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.08 |
Mean z-score | -1.63 |
Structure conservation index | 0.74 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7093576 92 - 22224390 ---G--UGUGUGAAGAUACAAUAUCUCAGGGCAGUGCGAUUGCGUGAGUAAUACAAACAAACA-----------GGAGACACAUGGGGCAUAU------AUGCCCCCUGGGCAG ---.--(((.(..(((((...)))))..).))).(((.(((((....)))))...........-----------(....).((.((((((...------.)))))).)).))). ( -27.90) >DroPse_CAF1 36455 102 - 1 UGUG--UGUGUGAAGAUACAAUAUCUUCUGGCAGUGCGAUUGCGUGUGGCAUACAAACAAACACUAGGCAGGCCAGAGACACAUGGGGCA----------UGCCCCCUGGGCAG ((((--(((((..(((((...)))))((((((..(((..(((.((((.............)))))))))).)))))).))))))((((..----------..))))....))). ( -30.82) >DroSec_CAF1 84663 92 - 1 ---G--UGUGUGAAGAUACAAUAUCUCAGGGCUGUGCGAUUGCGUGAGUAAUACAAACAAACA-----------GGAGACACAUGGGGCAUAU------AUGCCCCCUGGGCAG ---.--(((((....)))))...((((..(..(((...(((((....)))))....)))..).-----------.))))..((.((((((...------.)))))).))..... ( -30.60) >DroEre_CAF1 85370 95 - 1 UGUG--UGUGUGAAGAUACAAUAUCUCAGGGCAGUGCGAUUGCGUGAGUAAUACAAACAAACA-----------GGAGACACAUGGGGCAUAC------AUGCCCCCUGGGCAG ((((--(((((....)))))...((((..(...((...(((((....)))))....))...).-----------.)))))))).((((((...------.))))))........ ( -28.60) >DroYak_CAF1 85904 103 - 1 UGUGGUUGUGCGAAGAUACAAUAUCUCAGGGCAGUGCGAUUGCGUGAGUAAUACAAACAAACA-----------GGAGACACAUGGGGCAUACGAGUGUAUGCCCCCUGGGCAG ((((((((((......)))))).((((..(...((...(((((....)))))....))...).-----------.)))))))).(((((((((....)))))))))........ ( -35.30) >DroAna_CAF1 133084 91 - 1 ---G--UGCGUGAAGAUACAAUAUCCUUUGGCAGUGCGAUUGCGUGAGGAAUACAAACAAACACUG--------GCAGACACAUGGGGCA----------UGCCCCCUGGGCAG ---.--((((((..((((...)))).((((.(((((..(((.(....).))).........)))))--------.)))))))..((((..----------..))))....))). ( -25.60) >consensus ___G__UGUGUGAAGAUACAAUAUCUCAGGGCAGUGCGAUUGCGUGAGUAAUACAAACAAACA___________GGAGACACAUGGGGCAUA_______AUGCCCCCUGGGCAG ......(((.(..(((((...)))))..).))).(((.(((((....))))).............................((.(((((((........))))))).)).))). (-22.16 = -23.18 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:05 2006