Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 900,111 – 900,204 |
Length | 93 |
Max. P | 0.707833 |
Location | 900,111 – 900,204 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 82.76 |
Mean single sequence MFE | -33.39 |
Consensus MFE | -22.26 |
Energy contribution | -24.57 |
Covariance contribution | 2.31 |
Combinations/Pair | 1.17 |
Mean z-score | -2.02 |
Structure conservation index | 0.67 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.643138 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 900111 93 + 22224390 CGGCAGCCUCCACUUCCAUCGGUGGCUCCUCAACGGCGACCUCCCAGCUCUCGCCGAACUCCGAGGAGAGCGAGCUGCCUUUCGUCCUUCCCU .(((((((.(((((......)))))((((((..((((((...........))))))......))))))...).)))))).............. ( -33.90) >DroSec_CAF1 15126 93 + 1 CGGCAGCCUCCACUUCCCUCGGUGGCUCCUCAACGGCGACCUCCCAGCUCUCGCCGAACUCCGAGGAGAGCGAGCUGCCCUUCGUCCUGCCUU .((((((.((..((..(((((((((....))).((((((...........))))))....))))))..)).)))))))).............. ( -34.40) >DroSim_CAF1 15818 93 + 1 CGGCAGCCUCCACUUCCCUCGGUGGCUCCUCAACGGCGACCUCCCAGCUCUCGCCGAACUCCGAGGAGAGCGAGCUGCCCUUCCUCCUGCCCU .((((((.((..((..(((((((((....))).((((((...........))))))....))))))..)).)))))))).............. ( -34.40) >DroEre_CAF1 9079 93 + 1 CGGCAGCCUCCACUUCCCUCAGUGGCUCCUCGACGGCGCCCUCCCAGCUCUCGCCGGAUUCCGAGGAGAGCGAGCUGCCCUUCGUCCUGCCCU .(((((((.(((((......)))))(((((((.(((((.............))))).....)))))))...).)))))).............. ( -35.02) >DroYak_CAF1 8912 84 + 1 CGGCAGCCUCCUCCAC---------UUCCUCCACGGCGCCCUCCCAGCUCUCGCCGAACUCCGAGGAGAGCGAGCUGCCCUUCGUCCUGCCCU .((((((.(((((...---------.(((((..(((((.............)))))......)))))))).)))))))).............. ( -27.12) >DroAna_CAF1 11031 90 + 1 CUGGAGCAACGGGAUC---AGCUGGGUCCUCCACCACGACGGCCCAGCUCUCGCCCGAUUCGGAGGAGAGCGAACAGCCCUUUGUCCUGCCAC ...(.(((.((((...---(((((((((.((......)).)))))))))....))))....(((((((.((.....)).)))).))))))).. ( -35.50) >consensus CGGCAGCCUCCACUUCCCUCGGUGGCUCCUCAACGGCGACCUCCCAGCUCUCGCCGAACUCCGAGGAGAGCGAGCUGCCCUUCGUCCUGCCCU .((((((..(((((......)))))((((((..((((((...........))))))......)))))).....)))))).............. (-22.26 = -24.57 + 2.31)
Location | 900,111 – 900,204 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 82.76 |
Mean single sequence MFE | -42.02 |
Consensus MFE | -28.15 |
Energy contribution | -29.18 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.26 |
Mean z-score | -2.22 |
Structure conservation index | 0.67 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.707833 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 900111 93 - 22224390 AGGGAAGGACGAAAGGCAGCUCGCUCUCCUCGGAGUUCGGCGAGAGCUGGGAGGUCGCCGUUGAGGAGCCACCGAUGGAAGUGGAGGCUGCCG ..............(((((((((((.(((((((..((((((....)))))).(((..((.....)).))).)))).)))))))..))))))). ( -40.40) >DroSec_CAF1 15126 93 - 1 AAGGCAGGACGAAGGGCAGCUCGCUCUCCUCGGAGUUCGGCGAGAGCUGGGAGGUCGCCGUUGAGGAGCCACCGAGGGAAGUGGAGGCUGCCG ..............(((((((((((..((((((..((((((....)))))).(((..((.....)).))).))))))..))))..))))))). ( -45.60) >DroSim_CAF1 15818 93 - 1 AGGGCAGGAGGAAGGGCAGCUCGCUCUCCUCGGAGUUCGGCGAGAGCUGGGAGGUCGCCGUUGAGGAGCCACCGAGGGAAGUGGAGGCUGCCG ..............(((((((((((..((((((..((((((....)))))).(((..((.....)).))).))))))..))))..))))))). ( -45.60) >DroEre_CAF1 9079 93 - 1 AGGGCAGGACGAAGGGCAGCUCGCUCUCCUCGGAAUCCGGCGAGAGCUGGGAGGGCGCCGUCGAGGAGCCACUGAGGGAAGUGGAGGCUGCCG ..............(((((((((((..((((((..((((((....))))))..(((.((.....)).))).))))))..))))..))))))). ( -49.50) >DroYak_CAF1 8912 84 - 1 AGGGCAGGACGAAGGGCAGCUCGCUCUCCUCGGAGUUCGGCGAGAGCUGGGAGGGCGCCGUGGAGGAA---------GUGGAGGAGGCUGCCG ..............(((((((((((((((.(((.(((((((....)))))....)).))).))))..)---------))).....))))))). ( -35.10) >DroAna_CAF1 11031 90 - 1 GUGGCAGGACAAAGGGCUGUUCGCUCUCCUCCGAAUCGGGCGAGAGCUGGGCCGUCGUGGUGGAGGACCCAGCU---GAUCCCGUUGCUCCAG (..((((((...(((((.....)))))..)))....((((....(((((((((.((......)))).)))))))---...)))).)))..).. ( -35.90) >consensus AGGGCAGGACGAAGGGCAGCUCGCUCUCCUCGGAGUUCGGCGAGAGCUGGGAGGUCGCCGUUGAGGAGCCACCGAGGGAAGUGGAGGCUGCCG ..............(((((((....((((((((..((((((....)))))).((...)).))))))))((((........)))).))))))). (-28.15 = -29.18 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:25 2006