Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,083,323 – 7,083,443 |
Length | 120 |
Max. P | 0.999819 |
Location | 7,083,323 – 7,083,443 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.67 |
Mean single sequence MFE | -46.73 |
Consensus MFE | -45.22 |
Energy contribution | -45.33 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.06 |
Mean z-score | -2.64 |
Structure conservation index | 0.97 |
SVM decision value | 4.16 |
SVM RNA-class probability | 0.999819 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7083323 120 + 22224390 CAGAUGGAUUUUUACUCGCAGCGAUUGCGUCAGCUUGCGGGCACAACAAGCCCUGGAGCUGGCAGCACUGUUAACUCGAGCUCGCCGAGUCCUCGACAGAAGCAAUCGCCGCAUUUCGCG .................((.((((((((((((((((..((((.......))))..))))))))....(((((.(((((.(....))))))....)))))..)))))))).))........ ( -48.60) >DroGri_CAF1 171816 120 + 1 CAGAUGGAUUUUUACUCGCAGCGAUUGCGUCAGCUUGCGGGCACAACAAGCCCUGGAGCUGGCAACAUUGUUAACUCGAGCUCGCCGAGUCCACGACAGAAGCAAUCGCCGCGCUUUGCG ................(((.((((((((((((((((..((((.......))))..))))))))....((((..(((((.(....))))))..)))).....)))))))).)))....... ( -47.80) >DroSim_CAF1 74471 120 + 1 NNNNNNNNNNNNNNNNNNNNGCGAUUGCGUCAGCUUGCGGGCACAACAAGCCCUGGAGCUGGCAGCACUGUUAACUCGAGCUCGCCGAGUCCUCGACAGAAGCAAUCGCCGCAUUUCGCG ....................((((((((((((((((..((((.......))))..))))))))....(((((.(((((.(....))))))....)))))..))))))))(((.....))) ( -46.40) >DroWil_CAF1 166585 120 + 1 CAGAUGGAUUUUUACUCGCAGCGAUUGCGUCAGCUUGCGGGCACAACAAGCCCUGGAGCUGGCAACAUUGUUAACUCGAGCUCGCCGAGUCCCCGACAAAAGCAAUCGCCGCAUUUCGCG .................((.((((((((((((((((..((((.......))))..))))))))....(((((.(((((.(....))))))....)))))..)))))))).))........ ( -46.40) >DroMoj_CAF1 176141 120 + 1 CAGAUGGAUUUUUACUCGCAGCGAUUGCGUCAGCUUGCGGGCACAACAAGCCCUGGAGCUGGCAACAUUGUUAACUCGAGCUCGCCGAGUCCUAGACAGAAGCAAUCGCCGCGCUUUGCG ................(((.((((((((((((((((..((((.......))))..))))))))....(((((.(((((.(....))))))....)))))..)))))))).)))....... ( -47.00) >DroAna_CAF1 116654 120 + 1 CAGAUGGAUUUUUACUCGCAGCGAUUGCGUCAGCUUGCGGGCACAACAAGCCCUGGAGCUGGCAGCACUGUUAACUCGAGCUCGCCGAGUCCUCGACAGAAACAAUCGCCGCACUUUGCG .................((.(((((((.((((((((..((((.......))))..))))))))....(((((.(((((.(....))))))....)))))...))))))).))........ ( -44.20) >consensus CAGAUGGAUUUUUACUCGCAGCGAUUGCGUCAGCUUGCGGGCACAACAAGCCCUGGAGCUGGCAACACUGUUAACUCGAGCUCGCCGAGUCCUCGACAGAAGCAAUCGCCGCACUUCGCG .................((.((((((((((((((((..((((.......))))..))))))))....(((((.(((((.(....))))))....)))))..)))))))).))........ (-45.22 = -45.33 + 0.11)
Location | 7,083,323 – 7,083,443 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.67 |
Mean single sequence MFE | -45.98 |
Consensus MFE | -43.97 |
Energy contribution | -44.50 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.09 |
Mean z-score | -1.78 |
Structure conservation index | 0.96 |
SVM decision value | 2.32 |
SVM RNA-class probability | 0.992284 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7083323 120 - 22224390 CGCGAAAUGCGGCGAUUGCUUCUGUCGAGGACUCGGCGAGCUCGAGUUAACAGUGCUGCCAGCUCCAGGGCUUGUUGUGCCCGCAAGCUGACGCAAUCGCUGCGAGUAAAAAUCCAUCUG .......((((((((((((..((((....(((((((....).)))))).))))......(((((...((((.......))))...)))))..))))))))))))................ ( -47.30) >DroGri_CAF1 171816 120 - 1 CGCAAAGCGCGGCGAUUGCUUCUGUCGUGGACUCGGCGAGCUCGAGUUAACAAUGUUGCCAGCUCCAGGGCUUGUUGUGCCCGCAAGCUGACGCAAUCGCUGCGAGUAAAAAUCCAUCUG .......((((((((((((.((.((.((((.(.(((((((((((((((..((....))..)))))..)))))))))).).))))..)).)).))))))))))))................ ( -49.60) >DroSim_CAF1 74471 120 - 1 CGCGAAAUGCGGCGAUUGCUUCUGUCGAGGACUCGGCGAGCUCGAGUUAACAGUGCUGCCAGCUCCAGGGCUUGUUGUGCCCGCAAGCUGACGCAAUCGCNNNNNNNNNNNNNNNNNNNN (((.....)))((((((((..((((....(((((((....).)))))).))))......(((((...((((.......))))...)))))..)))))))).................... ( -41.00) >DroWil_CAF1 166585 120 - 1 CGCGAAAUGCGGCGAUUGCUUUUGUCGGGGACUCGGCGAGCUCGAGUUAACAAUGUUGCCAGCUCCAGGGCUUGUUGUGCCCGCAAGCUGACGCAAUCGCUGCGAGUAAAAAUCCAUCUG .......((((((((((((.......(..(((((((....).))))))..)........(((((...((((.......))))...)))))..))))))))))))................ ( -46.70) >DroMoj_CAF1 176141 120 - 1 CGCAAAGCGCGGCGAUUGCUUCUGUCUAGGACUCGGCGAGCUCGAGUUAACAAUGUUGCCAGCUCCAGGGCUUGUUGUGCCCGCAAGCUGACGCAAUCGCUGCGAGUAAAAAUCCAUCUG .......((((((((((((...(((....(((((((....).)))))).))).......(((((...((((.......))))...)))))..))))))))))))................ ( -46.60) >DroAna_CAF1 116654 120 - 1 CGCAAAGUGCGGCGAUUGUUUCUGUCGAGGACUCGGCGAGCUCGAGUUAACAGUGCUGCCAGCUCCAGGGCUUGUUGUGCCCGCAAGCUGACGCAAUCGCUGCGAGUAAAAAUCCAUCUG .......((((((((((((..((((....(((((((....).)))))).))))......(((((...((((.......))))...)))))..))))))))))))................ ( -44.70) >consensus CGCAAAAUGCGGCGAUUGCUUCUGUCGAGGACUCGGCGAGCUCGAGUUAACAAUGCUGCCAGCUCCAGGGCUUGUUGUGCCCGCAAGCUGACGCAAUCGCUGCGAGUAAAAAUCCAUCUG .......((((((((((((..((((....(((((((....).)))))).))))......(((((...((((.......))))...)))))..))))))))))))................ (-43.97 = -44.50 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:02 2006