Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,070,379 – 7,070,473 |
Length | 94 |
Max. P | 0.748347 |
Location | 7,070,379 – 7,070,473 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 51.13 |
Mean single sequence MFE | -27.24 |
Consensus MFE | -8.45 |
Energy contribution | -5.68 |
Covariance contribution | -2.77 |
Combinations/Pair | 1.80 |
Mean z-score | -1.20 |
Structure conservation index | 0.31 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.748347 |
Prediction | RNA |
WARNING | Mean pairwise identity too low. |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7070379 94 - 22224390 AUAAAGCAGGAGGGACA-------UUGGUGUAGCAAGGGGAAUGCUCGAGUUCCGUUU-UAGUUGAGUGAGCUAUUUAUGGAGACAAUGCUCCACAGAUCCU .......((((.(((((-------(((.((.((((.......))))))..((((((..-(((((.....)))))...)))))).))))).))).....)))) ( -24.00) >DroVir_CAF1 158939 92 - 1 AACAUCUU---UGUUAUAGCUGGAAUCCUUGCAUUGCGCAUCCAACGAAGUUUGUUGC-CCUCUGCGCAGUGUGCAAGGCAUGUGCGCAGCUCAAG------ ((((....---))))..((((((.((((((((((((((((..((((((...)))))).-....))))))..)))))))).))...).)))))....------ ( -30.60) >DroGri_CAF1 151710 91 - 1 AACAUCUU---GGAUGU-------AUCCUUGCAUUGCGCAUCCAACUGAGUUUGUUGC-CCUCUGCGCAGUGCGAGCGGCAUGUGCGUAGCUCAAGCAAGAG ....((((---(.....-------......((((((((((..((((.......)))).-....))))))))))((((.((....))...))))...))))). ( -32.40) >DroSec_CAF1 61317 91 - 1 AUAAAGCA---UGGACA-------UUGUUGUAGCAAGGGGGACGCUCGAGUUCCGUUU-CAGUUAAGUGAGCUAUUUAUGGAGACAAUGCUCCACAGAUCCU ........---((((((-------((((((((((....(((((......)))))...(-((......)))))))).......))))))).))))........ ( -22.71) >DroEre_CAF1 62429 90 - 1 GUGAAACA---GGGACA-------UUGGUGUAGCAGGG-UGAUGCUCGAGUUCCGUUU-CAGAUUAGUGAGCUAUUUAUGGAGACAAUGCUCCACAGAUCCU .((((((.---(((((.-------(((....((((...-...))))))))))))))))-))((((.((((((......((....))..))).))).)))).. ( -26.80) >DroYak_CAF1 62029 92 - 1 AUGAAACA---GGAAGA-------UUGCUGUAGCAGGGGGGAUGCUCGAGUUCCGUUUUCGGUUCGGUGAGCUAUUUAUGGAGACAAUGCUCCACAGAUCCU .......(---(((...-------((((....))))((((.(((((((.(..(((....)))..)..)))))......((....)))).)))).....)))) ( -26.90) >consensus AUAAAACA___GGGACA_______UUGCUGUAGCAGGGGGGACGCUCGAGUUCCGUUU_CAGUUGAGUGAGCUAUUUAUGGAGACAAUGCUCCACAGAUCCU ...................................((((((((......))))).)))........(.((((......((....))..)))))......... ( -8.45 = -5.68 + -2.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:58 2006