Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,064,073 – 7,064,182 |
Length | 109 |
Max. P | 0.893110 |
Location | 7,064,073 – 7,064,182 |
---|---|
Length | 109 |
Sequences | 3 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 91.36 |
Mean single sequence MFE | -25.27 |
Consensus MFE | -21.02 |
Energy contribution | -21.47 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.03 |
Mean z-score | -2.81 |
Structure conservation index | 0.83 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.893110 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7064073 109 + 22224390 UCAAAAACUGAAGUAAUGCAUCUAGCUAAUCAAAGGUCAAUUAAAAAUUGAGUUUAUUUUUUCCAGUGCGUACGGUCCGCGAAUAGCGGAAAAGUUGCAAAAAUAAAAC ......((((.......((.....))......(((.(((((.....))))).)))........))))(((.((..(((((.....)))))...)))))........... ( -21.30) >DroSec_CAF1 55071 106 + 1 UCAAAAACUGAAGUAAUGCUUCAAGCUGAUCAAAAAUCAAUUAAAAAUUCAGUUU---UUUUCCAGUGCGCACGGUCCGCGAAUAGCGGAAAAGUUGCAAAAAUAGAAC ..((((((((((.((((((.....))((((.....))))))))....))))))))---))......((((.((..(((((.....)))))...)))))).......... ( -25.60) >DroSim_CAF1 55516 105 + 1 UGAAAAACUGAAGUAAUGCUUCAAGCUGAUCAAAAAUCAAUUAAAAAUUCAGUUU----UUCCCAGUGCGCACGGUCCGCGAAUAGCGGAAAAGUUGCAAAAAUAGAAC .(((((((((((.((((((.....))((((.....))))))))....))))))))----)))....((((.((..(((((.....)))))...)))))).......... ( -28.90) >consensus UCAAAAACUGAAGUAAUGCUUCAAGCUGAUCAAAAAUCAAUUAAAAAUUCAGUUU___UUUUCCAGUGCGCACGGUCCGCGAAUAGCGGAAAAGUUGCAAAAAUAGAAC ....((((((((.((((((.....))((((.....))))))))....))))))))...........((((.((..(((((.....)))))...)))))).......... (-21.02 = -21.47 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:57 2006