Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,062,987 – 7,063,078 |
Length | 91 |
Max. P | 0.500000 |
Location | 7,062,987 – 7,063,078 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 93.41 |
Mean single sequence MFE | -30.04 |
Consensus MFE | -23.42 |
Energy contribution | -24.46 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.05 |
Mean z-score | -1.51 |
Structure conservation index | 0.78 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7062987 91 - 22224390 GUGGACGCACAAUGUGCUGCAAGUGGUGCUGGUGGUGCCAGUGGUGUCAGUGGUGCUGCCAUUACCGUUAGACUCACCUGCAAAGAGAAAA (..(.(((.....))))..)....((((.(((..(..(((.((....)).)))..)..))).))))......(((.........))).... ( -31.70) >DroSec_CAF1 53976 91 - 1 GUGGACGCACAAUGUGGUGCAAGUGGUGCUGGUGGUGCCAGUGGUGUCAGUGGUGCUGCCAUUACCGUUAGACUCACCUGCAAAGAGAAAA (..(..((((......))))....((((.(((..(..(((.((....)).)))..)..))).))))...........)..).......... ( -33.30) >DroSim_CAF1 54421 91 - 1 GUGGACGCACAAUGUGGUGCAAGUGGUGCUGGUGGUGCCAGUGGUGUCAGUGGUGCUGCCAUUACCGUUAGACUCACCUGCAAAGAGAAAA (..(..((((......))))....((((.(((..(..(((.((....)).)))..)..))).))))...........)..).......... ( -33.30) >DroEre_CAF1 54922 91 - 1 GUGGACGCACAAUGUGCUGCAAGUGGUGCAAGUGGUGGCAGUGGUGUCAGUGGUGCUGCCAUUACCGUUAGACUCACCUGCAAAGAGAAAA ......((((...))))((((.(((((((..((((((((((((.(......).)))))))))))).))...)).))).))))......... ( -28.40) >DroYak_CAF1 54095 82 - 1 GUGGACGCACAAUGUG---------GUGCAAGUGGUACCAGUGGUGUCAGUGGUGCUGCCAUUACCGUUAGACUCACCUGCAAAGAGAAAA ..((..((((......---------))))..(..((((((.((....)).))))))..).....))......(((.........))).... ( -23.50) >consensus GUGGACGCACAAUGUGCUGCAAGUGGUGCUGGUGGUGCCAGUGGUGUCAGUGGUGCUGCCAUUACCGUUAGACUCACCUGCAAAGAGAAAA (..(.(((.....)))........((((.(((..((((((.((....)).))))))..))).))))...........)..).......... (-23.42 = -24.46 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:57 2006