Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,053,438 – 7,053,533 |
Length | 95 |
Max. P | 0.500000 |
Location | 7,053,438 – 7,053,533 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 82.57 |
Mean single sequence MFE | -34.98 |
Consensus MFE | -22.89 |
Energy contribution | -23.00 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.16 |
Mean z-score | -1.62 |
Structure conservation index | 0.65 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7053438 95 + 22224390 ACAUAACCCGAC-AUUGGGGC-----GCUAUUGAUUUUGGCCG-GAAUUUUGU--GUUGUCCACAAGGGAUGC-GAAUAACGCCCCCGGGGUUGGGGC-CCAAAAA ......((((((-...(((((-----((((.......))))((-.(.((((((--(.....)))))))..).)-)......)))))....))))))..-....... ( -31.30) >DroSec_CAF1 44812 95 + 1 ACAUAACCCGAC-AUUGGGGC-----GCUAUUGAUUUUGGUCG-GAGUUGUGU--GUUGUCCACAAGGGAUGC-GAAUAACGCCCCCGGGGUUGGGGC-CCAAAAA ......((((((-.((((((.-----((..(((((....))))-).(((((.(--((.((((.....))))))-).))))))))))))).))))))..-....... ( -33.50) >DroSim_CAF1 45249 95 + 1 ACAUAACCCGAC-AUUGGGGC-----GCUAUUGAUUUUGGCCG-GAGUUGUGU--GUUGUCCACAAGGGAUGC-GAAUAACGCCCCCGGGGUUGGGGC-CCAAAAA ......((((((-...(((((-----((((.......))))..-..(((((.(--((.((((.....))))))-).))))))))))....))))))..-....... ( -33.60) >DroEre_CAF1 45233 96 + 1 ACAUAACCCGAC-AUUGGGGC-----GCUAUUGAUUUUGGCCU-GGGUUGUGU--GCUGUCCACAAGGGAUGCCGAAUAACGCCCCCGGGGUUGGGAC-CCAAAAA ......((((((-...(((((-----((((.......))))..-..(((((..--((.((((.....))))))...))))))))))....))))))..-....... ( -34.20) >DroYak_CAF1 44562 95 + 1 ACAUAACCCGAC-AUUGGGGC-----GCUAUUGAUUUUGGCCA-GAGUUGUGU--GCUGUCCACAAGGGAUGC-GAAUAACGCCCCCGGGGUUGGGAC-CCAAAAA ......((((((-...(((((-----((((.......))))..-..(((((.(--((.((((.....))))))-).))))))))))....))))))..-....... ( -36.00) >DroAna_CAF1 88936 95 + 1 ------CCGAACAACUGGGGCUGGAAGCUAUUGAUUUUGGCUGGGAGCUGAGCUCCUUGUCCGCCAGGGAUGC-GAGU----CCUCCGGCCACCGGUCACCGGACU ------(((....(((((((((((((((((.......))))).(((.((..((((((((.....)))))).))-.)))----))))))))).)))))...)))... ( -41.30) >consensus ACAUAACCCGAC_AUUGGGGC_____GCUAUUGAUUUUGGCCG_GAGUUGUGU__GUUGUCCACAAGGGAUGC_GAAUAACGCCCCCGGGGUUGGGGC_CCAAAAA ......((((((....(((((.....((((.......)))).................((((.....))))..........)))))....)))))).......... (-22.89 = -23.00 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:52 2006