Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,038,495 – 7,038,590 |
Length | 95 |
Max. P | 0.988465 |
Location | 7,038,495 – 7,038,590 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 76.49 |
Mean single sequence MFE | -23.54 |
Consensus MFE | -10.21 |
Energy contribution | -11.05 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.06 |
Mean z-score | -2.52 |
Structure conservation index | 0.43 |
SVM decision value | 2.12 |
SVM RNA-class probability | 0.988465 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7038495 95 + 22224390 AAAC-UGAGUAACAUACUUUCGCAAG-----UA-AAACAGCAAUCAUUUUUCUCAGUGCAUGCAUAUGUUAUGCACA----UAUGUGUAACCCCGAUGAUUGCGUA ....-......((.(((((....)))-----))-.....(((((((((.......((..((((((((((.....)))----))))))).))...))))))))))). ( -20.90) >DroSec_CAF1 29969 92 + 1 ACCUCGAAGUAACUUACUUCCGAAAG-----UA-GAUAUGCAAUCAUUUUUCUCAGUGCAUGCAUAUGUUAUG--------UAUGUGUAACCCCGAUGAUUGCGUA .....((((((...))))))(....)-----..-..((((((((((((.......(..((((((((...))))--------))))..)......)))))))))))) ( -26.42) >DroSim_CAF1 29986 92 + 1 ACCUCGAAGUAACUUACUUCCGAAAG-----UA-GAUAUGCAAUCAUUUUUCUCAGUGCAUGCAUAUGUUAUG--------UAUGUGUAACCCCGAUGAUUGCGUA .....((((((...))))))(....)-----..-..((((((((((((.......(..((((((((...))))--------))))..)......)))))))))))) ( -26.42) >DroEre_CAF1 29692 98 + 1 AGCAUAAAGUAAUUUGCCUCCGAGAGUUUUUUACUCAAUCCAAUCAUUUUUCUCAGUGCGUGCAUAUGUUAU--------GUAUGUGUAACCCCGAUGAUUGCGUA .(((..........)))......((((.....)))).((.((((((((.......(..((((((((...)))--------)))))..)......)))))))).)). ( -20.12) >DroYak_CAF1 28517 89 + 1 ACCAUGAAAUGAAUG----------------UA-AAAAACCAAUCAUUUUUCCCAGUGCAUGCAUAUGUUAUGUACAUAUGUAUGUGUAACCCCGAUGAUUGCGUA ...............----------------..-....((((((((((.......(..(((((((((((.....)))))))))))..)......)))))))).)). ( -23.82) >consensus ACCACGAAGUAACUUACUUCCGAAAG_____UA_AAAAUGCAAUCAUUUUUCUCAGUGCAUGCAUAUGUUAUG________UAUGUGUAACCCCGAUGAUUGCGUA .....................................(((((((((((.......(..((((...................))))..)......))))))))))). (-10.21 = -11.05 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:48 2006