Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,030,788 – 7,030,906 |
Length | 118 |
Max. P | 0.500000 |
Location | 7,030,788 – 7,030,906 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 91.33 |
Mean single sequence MFE | -35.32 |
Consensus MFE | -25.94 |
Energy contribution | -26.78 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.09 |
Mean z-score | -1.69 |
Structure conservation index | 0.73 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7030788 118 - 22224390 AUCUGGCACAGCUUCUGUGCGGACUCACAUUUCUCAAGUUGUACUCCAUUAGCUAAUGGACUCGAUGUCCACUUGUUGUGCAAACUCAAUU-UUGGGUUUUGUGAAUUGGGAGUCGCAC .....((((((...)))))).(((((.((.(((.((((((((((..((..((....(((((.....)))))))))..))))))(((((...-.))))))))).))).)).))))).... ( -36.40) >DroSec_CAF1 22296 117 - 1 AUCUGGCACAGCUUCUGUGCGGACUCACAUUUCUCAAGUUGUACUCCAUUAGCUAAUGGACUCGAUGUCCACUUGUUGUGCAAACUCAAUU-UUGGGUUUUACGGAUAGGGAGUCGCA- .....((((((...)))))).(((((..........(((((........)))))..(((((.....)))))(((((((((.(((((((...-.)))))))))).)))))))))))...- ( -35.20) >DroSim_CAF1 21457 117 - 1 AUCUGGCACAGCUUCUGUGCGGACUCACAUUUCCCAAGUUGUACUCCAUUAGCUAAUGGACUCGAUGUCCACUUGUUGUGCAAACUCAAUU-UUGGGUUUUGCGGAUAGAGAGUCGCA- .....((((((...)))))).((((((((..........)))..(((..((((...(((((.....)))))...)))).(((((((((...-.)))).))))))))....)))))...- ( -35.30) >DroEre_CAF1 22355 116 - 1 AUCUGGCACAGCUUCUGUGCGGACUCACAUUUUUCAAGGGGCACUCCAUUAGCUAAUGGACUCGAUGUCCACUUAUUGUGCAAACUCAAUU-UUGGGCUUUGUGGACAGG-AGUCGCA- .....((((((...)))))).(((((............(((...((((((....)))))))))..(((((((.....((.((((......)-))).))...))))))).)-))))...- ( -37.30) >DroYak_CAF1 20342 115 - 1 AUCUGGCACAGCUUCUGUGCGGACUCACAUCUUUCGAGGGGUACUCCAUUAGCUAAUGGACUCGAUGUCCACUUGUUGUGCAAACUCAAUUUUUGGGUUUUGUGGAUAGG-ACCUG--- .((((.(((((...)))))))))(((.........)))((((..(((((((((...(((((.....)))))...))))...(((((((.....))))))).)))))....-)))).--- ( -32.40) >consensus AUCUGGCACAGCUUCUGUGCGGACUCACAUUUCUCAAGUUGUACUCCAUUAGCUAAUGGACUCGAUGUCCACUUGUUGUGCAAACUCAAUU_UUGGGUUUUGUGGAUAGGGAGUCGCA_ .....((((((...)))))).(((((.(................((((((....)))))).....(((((((.....))(((((((((.....)))).))))))))))).))))).... (-25.94 = -26.78 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:42 2006