Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,030,320 – 7,030,412 |
Length | 92 |
Max. P | 0.890274 |
Location | 7,030,320 – 7,030,412 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 83.59 |
Mean single sequence MFE | -17.20 |
Consensus MFE | -15.27 |
Energy contribution | -15.27 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.76 |
Structure conservation index | 0.89 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.890274 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7030320 92 + 22224390 CUCUGUUUUUUUUAUUUUUGGUAUUUUGCUUCGUAUUUAUUUAUUCCUGUUGUGCUUUUUGCCUUGACAAAGGAAAAGAAUGCAGGAAGGCU ...........................................(((((((....((((...((((....)))).))))...))))))).... ( -16.00) >DroSec_CAF1 21862 72 + 1 CUCUGUUUUUU-------------------UCGUAUUUAUUUAUUCCUGUUGUGCUU-UUGCCUUGACAAAGGAAAAGAAUGCAGGAAGGCU ...........-------------------.............(((((((....(((-((.((((....)))))))))...))))))).... ( -17.80) >DroSim_CAF1 21023 72 + 1 CUCCGUUUUUU-------------------UCGUAUUUAUUUAUUCCUGUUGUGCUU-UUGCCUUGACAAAGGAAAAGAAUGCAGGAAGGCU ...........-------------------.............(((((((....(((-((.((((....)))))))))...))))))).... ( -17.80) >consensus CUCUGUUUUUU___________________UCGUAUUUAUUUAUUCCUGUUGUGCUU_UUGCCUUGACAAAGGAAAAGAAUGCAGGAAGGCU ...........................................(((((((....(((....((((....))))..)))...))))))).... (-15.27 = -15.27 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:40 2006