Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,021,252 – 7,021,350 |
Length | 98 |
Max. P | 0.990896 |
Location | 7,021,252 – 7,021,350 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 81.82 |
Mean single sequence MFE | -32.32 |
Consensus MFE | -20.02 |
Energy contribution | -19.90 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.08 |
Mean z-score | -3.11 |
Structure conservation index | 0.62 |
SVM decision value | 2.24 |
SVM RNA-class probability | 0.990896 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7021252 98 - 22224390 ACGCGAUGUCGAUACAG------AUACAGAUACAGCCAAAGAUACGGGUUCGAAUUCGGAUUGGGAUU------GGGAUUUGUAUUUGUAUUUGUAUUUUGGCUUUUCGA ...(((.((((((((((------(((((((((((.((...(((.(.((((((....)))))).).)))------.))...))))))))))))))))))..)))...))). ( -35.70) >DroSec_CAF1 12933 86 - 1 ACGCGAUGUCGAUACAG------AUACAGAUACAGUCAAAGAUACGGCUUCGGAUUCGGAUU------------------GGGAUUUGUAUUUGUAUUUUGGCUUUUCGA ...(((.((((((((((------((((((((.(((((...((..((....))...)).))))------------------)..)))))))))))))))..)))...))). ( -28.40) >DroSim_CAF1 12063 104 - 1 ACGCGAUGUCGAUACAG------AUACAGAUACAGCCAAAGAUACGGCUUCGGAUUCGGAUUGGGAUUGGGAUUGGGAUUGGGAUUUGUAUUUGUAUUUUGGCUUUUCGA ...(((.((((((((((------((((((((.(((((........)))(((.(((((.(((....))).))))).))).))..)))))))))))))))..)))...))). ( -32.70) >DroEre_CAF1 13000 97 - 1 ACGCGAUGUCGAUACAGAAACAGAUACAGAUACAGCCAAAGAUACGGCUUCGGAUUCGGAUUCGGCUUGGGAC------------UUGUAUUUGUGU-UUGGCUUUUCGA ........((((...((...(((((((((((((((((.(((...((..((((....))))..)).))).)).)------------.)))))))))))-))).))..)))) ( -30.50) >DroYak_CAF1 10700 109 - 1 ACGCGAUGUCGAUACAGAUACAGAUACAGAUACAGCCAAAGAUACGGCUUCGGAUUCGGAUUGGGAUUGGGAUUGGAAUUGGGUUUUGUAUUUGUAU-UUGGCUUUUCGA ........((((..((((((((((((((((..(((((........)))(((.(((((.(((....))).))))).))).))...)))))))))))))-))).....)))) ( -34.30) >consensus ACGCGAUGUCGAUACAG______AUACAGAUACAGCCAAAGAUACGGCUUCGGAUUCGGAUUGGGAUUGGGA__GG_AUUGGGAUUUGUAUUUGUAUUUUGGCUUUUCGA ...(((.(((((...........((((((((((((((........)))((((....))))..........................))))))))))).)))))...))). (-20.02 = -19.90 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:39 2006