Locus 2627

Sequence ID X_DroMel_CAF1
Location 7,007,298 – 7,007,410
Length 112
Max. P 0.969757
window4304

overview

Window 4

Location 7,007,298 – 7,007,410
Length 112
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 87.41
Mean single sequence MFE -21.44
Consensus MFE -19.38
Energy contribution -19.62
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -2.14
Structure conservation index 0.90
SVM decision value 1.65
SVM RNA-class probability 0.969757
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7007298 112 - 22224390
UCAGACUUGCCGACCAUCCCCUAAACGGGCGUCCAAAUCACAUGUACAUAAGCCCACAUAUAUGAUGGGCCAUGGCAUGCCAACUACAUAAGACACACACA--------CACACCAACAA
...((.(((..(((...(((......))).)))))).)).(((((.(((..(((((((....)).))))).))))))))......................--------........... ( -20.60)
>DroSec_CAF1 8523 110 - 1
UCAGACUUGCCGACCAUCCCCUAAAUGGGCGUCCAAAUCACAUGUACAUAAGCCCACAUAUAUGAUGGGCCAUGGCAUGGCAUCUACAUAAGACACAC--A--------CACACCAACAA
..(((..(((((.(((((.......(((((.....................))))).......)))))((....)).)))))))).............--.--------........... ( -23.94)
>DroEre_CAF1 14384 115 - 1
UCAGACUUGCCGACCAUCCCCUAAGCGGGCGUCCAAAUCACAUGUACAUAAGCCCACAUAUAUGAUGGGCCAAGGCA-----UCUACAUAACACACACACACACAUACAAGCACCAAGAA
..(((..(((((((...(((......))).)))..................(((((((....)).)))))...))))-----)))................................... ( -20.70)
>DroYak_CAF1 22865 115 - 1
UCAGACUUGCCGACCAUCCCCUAAACGGGCGUCCAAAUCACAUGUACAUAAGCCCACAUAUAUGAUGGGCCAUGGCA-----UCUACAUAGCACACACACACAAACACACACACCAACAA
..(((..(((((((...(((......))).)))..................(((((((....)).)))))...))))-----)))................................... ( -20.50)
>consensus
UCAGACUUGCCGACCAUCCCCUAAACGGGCGUCCAAAUCACAUGUACAUAAGCCCACAUAUAUGAUGGGCCAUGGCA_____UCUACAUAACACACACACA________CACACCAACAA
..(((..(((((((...(((......))).)))..................(((((((....)).)))))...)))).....)))................................... (-19.38 = -19.62 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:33 2006