Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,006,836 – 7,006,941 |
Length | 105 |
Max. P | 0.734754 |
Location | 7,006,836 – 7,006,941 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.47 |
Mean single sequence MFE | -26.32 |
Consensus MFE | -23.83 |
Energy contribution | -23.95 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.07 |
Mean z-score | -1.50 |
Structure conservation index | 0.91 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.734754 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7006836 105 - 22224390 ---------------CCAGUCGUCCAAACAACAAUGUUCGCGAAAAAAGGACAUUUUAUGUGUGCACCAUAAAGGCAUUAGCAUUAUCGCUCGUUAUGUCCUGAAUACGCCCGGCAUAUC ---------------...((((....((((....)))).(((.....(((((((...(((.(((....((((..((....)).))))))).))).))))))).....))).))))..... ( -22.80) >DroSec_CAF1 8070 105 - 1 ---------------CCAGCCGUCCAAACAACAAUGUUCGCGAAAAAAGGACAUUUUAUGUGUGCACCAUAAAGGCAUUAGCAUUAUCGCUCGUUAUGUCCUGAAUACGCCCGGCAUAAC ---------------...((((....((((....)))).(((.....(((((((...(((.(((....((((..((....)).))))))).))).))))))).....))).))))..... ( -25.50) >DroEre_CAF1 13921 109 - 1 CCUCC----------CCAGCCGUACGAGCAACAAUGUUCGCGAAA-AAGGACAUUUUAUGUGUGCACCAUAAAGGCAUUAGCAUUAUCGCUCGUUAUGUCCUGAAUACCCCCGGCAUAUC .....----------...((((..((((((....)))))).....-.(((((((...(((.(((....((((..((....)).))))))).))).))))))).........))))..... ( -27.00) >DroYak_CAF1 22345 120 - 1 CCUCCACCCCCCCCUCCAGCCGGCCGAACAACAAUGUUCGCGAAAAAAGGACAUUUUAUGUGUGCACCAUAAAGGCAUUAGCAUUAUCGCUCGUUAUGUCCUGAAUACCCCCGGCAUUUC ..................((((((((((((....)))))).).....(((((((...(((.(((....((((..((....)).))))))).))).)))))))........)))))..... ( -30.00) >consensus _______________CCAGCCGUCCAAACAACAAUGUUCGCGAAAAAAGGACAUUUUAUGUGUGCACCAUAAAGGCAUUAGCAUUAUCGCUCGUUAUGUCCUGAAUACCCCCGGCAUAUC ..................((((..((((((....)))))).......(((((((...(((.(((....((((..((....)).))))))).))).))))))).........))))..... (-23.83 = -23.95 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:29 2006