Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,005,532 – 7,005,652 |
Length | 120 |
Max. P | 0.704935 |
Location | 7,005,532 – 7,005,652 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.83 |
Mean single sequence MFE | -28.68 |
Consensus MFE | -25.77 |
Energy contribution | -26.27 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.71 |
Structure conservation index | 0.90 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.704935 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7005532 120 - 22224390 GAGUGUUUUGCAUAUCAGAAAUAUAAAUCACUUGGCAUCAGACCAAAGCCAAAGCCAACGGGAAACCCGCCGUCCAGGAAAACCGAAUCCUGCCCAAACUCCAUUCAGCUGAUCUGCCAC ..(((....(((.(((((...............(((...........((....))....((....)).)))(..(((((........)))))..).............))))).)))))) ( -25.50) >DroSec_CAF1 6787 118 - 1 GAGUGUUUUGCAUAUCAGAAAUAUAAAUCACUUGGCAUCAGACCAAAGCCAAAGCCAACGGGAAACCCGCCGUCCAGGAAAACCGAAUCCUGCCCAAGCUCCAUUCAGCUGAUCUGCC-- .........(((.(((((.............(((((...........)))))(((....((....))....(..(((((........)))))..)..)))........))))).))).-- ( -26.60) >DroEre_CAF1 12592 120 - 1 GAGUGUUUUGCAUAUCAGAAAUAUAAAUCACUUGGCAUCAGACCAAAGCCAAAGCCAACGGGAAACCCGCCGUCCAGGAAAACCGAAUCCUGGCCAAACUCCUUCUAUCUGAUCUGCCAC ..(((....(((.((((((..............(((...........((....))....((....)).)))(.((((((........)))))).)............)))))).)))))) ( -30.10) >DroYak_CAF1 20977 120 - 1 GAGUGUUUUGCAUAUCAGAAAUAUAAAUCACUUGGCAUCAGACCAAAGCCAAAGCCAACGGGAAACCCGCCGUCCAGGAAAACCGAAUCCUGGCCAAACUCCUUCCAGCUGAUAUGCCAC ..(((....(((((((((...............(((...........((....))....((....)).)))(.((((((........)))))).).............)))))))))))) ( -32.50) >consensus GAGUGUUUUGCAUAUCAGAAAUAUAAAUCACUUGGCAUCAGACCAAAGCCAAAGCCAACGGGAAACCCGCCGUCCAGGAAAACCGAAUCCUGCCCAAACUCCAUCCAGCUGAUCUGCCAC .........(((.(((((...............(((...........((....))....((....)).)))(.((((((........)))))).).............))))).)))... (-25.77 = -26.27 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:23 2006