Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,003,387 – 7,003,501 |
Length | 114 |
Max. P | 0.500000 |
Location | 7,003,387 – 7,003,501 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.37 |
Mean single sequence MFE | -27.37 |
Consensus MFE | -18.80 |
Energy contribution | -18.80 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.97 |
Structure conservation index | 0.69 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7003387 114 - 22224390 CCCUAUUCUUCCCCUUU--UUCCUUGAUUUUCUGCCGCUUGUUUU-CCUUC-GUUCUUAUCUCAUUUGGAAUUAUUUGCUUAAAUAGCAUGGAGAA-CAAGAGUCAGAGGAUG-AUACAA .................--.....(.((((((((.(.((((((((-((...-(((((..........)))))....((((.....)))).))))))-)))).).)))))))).-)..... ( -27.00) >DroSec_CAF1 4787 116 - 1 CCCUAUUCUUCCCCUUUUUUUUCUUGAUUUUCUGCCGCUUGUUUU-CCUUC-GUUCUUAUCUCAUUUGGAAUUAUUUGCUUAAAUAGCAUGGAGAA-CAAGAGUCAGAGGAUG-AUACAA ........................(.((((((((.(.((((((((-((...-(((((..........)))))....((((.....)))).))))))-)))).).)))))))).-)..... ( -27.00) >DroEre_CAF1 10540 118 - 1 CUCUAUUCUUCCCCUUU--CUGCUUGAUUUUCUGCCGCUUGUUUUUCCAUCUUUUCUUAUCUCAUUUGGAAUGAUUUGCUUAAAUAGCAAGGAGAACCAAGAGUCAGAGGAUGAAUACAA ...(((((.(((....(--(.....))...((((.(.((((.(((((((((.((((...........)))).)))(((((.....))))))))))).)))).).))))))).)))))... ( -28.10) >consensus CCCUAUUCUUCCCCUUU__UUCCUUGAUUUUCUGCCGCUUGUUUU_CCUUC_GUUCUUAUCUCAUUUGGAAUUAUUUGCUUAAAUAGCAUGGAGAA_CAAGAGUCAGAGGAUG_AUACAA ..........................((((((((.(.((((.(((.((.....((((..........)))).....((((.....)))).)).))).)))).).))))))))........ (-18.80 = -18.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:20 2006