Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,003,128 – 7,003,243 |
Length | 115 |
Max. P | 0.558065 |
Location | 7,003,128 – 7,003,243 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.33 |
Mean single sequence MFE | -28.95 |
Consensus MFE | -20.36 |
Energy contribution | -21.68 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.04 |
Mean z-score | -1.50 |
Structure conservation index | 0.70 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.558065 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7003128 115 + 22224390 CUGGGGGCUGGUAGAAAGU-----GGUGGGCGAAAGCCGACUGGCAGACUGAUUUAUUUUGCUGGCUCUUUUCAACCAUUUUUAUUAUUAUUACGAUUAUUAUUUCUGUUUUGUUUGGCA ......((..(..((((((-----(((.(((....)))(((..(((((.........)))))..).))......)))))))))...........((........))........)..)). ( -28.50) >DroSec_CAF1 4532 111 + 1 ---------GGUAGAAAGUGGGUGGGUGGGCGAAAGCCGACUGGCAGACUGAUUUAUUUUGCUGGCUCUUUUCAACCAUUUUUAUUAUUAUUACGAUUAUUAUUUCUGUUUUGUUUUGCA ---------(((.(((((.((((.(((.(((....))).)))((((((.........)))))).))))))))).)))........................................... ( -27.20) >DroSim_CAF1 7558 110 + 1 ---------GGUAGAAAGUGGGUGGGUGGGCGAAAGCCGACUGGCAGACUGAUUUAUUUUGCUGGCUCUUUUCAACCAUUUAUGCUAAUAUUGAGCAUAUUAUUUCA-UUUUUUUAGGCA ---------(((.(((((.((((.(((.(((....))).)))((((((.........)))))).))))))))).)))...((((((.......))))))........-............ ( -32.20) >DroEre_CAF1 10295 111 + 1 U---------GAAAAAAGUGGGUGGGUGGGCGAAAGCCGACUGGCAGACUGAUUUAUUUAGCUGGCUCUUUUCAACCAUUUUUAUUAUUAUUACGAUUAUUAUUUCUGUUUUGUUUGGCA (---------((.((((((((.(((((.(((....))).)))(.(((.((((.....))))))).)......)).)))))))).)))....................(((......))). ( -27.90) >consensus _________GGUAGAAAGUGGGUGGGUGGGCGAAAGCCGACUGGCAGACUGAUUUAUUUUGCUGGCUCUUUUCAACCAUUUUUAUUAUUAUUACGAUUAUUAUUUCUGUUUUGUUUGGCA .............((((((((.((((..(((....)))(((..(((((.........)))))..).))..)))).))))))))..................................... (-20.36 = -21.68 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:19 2006