Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,002,229 – 7,002,341 |
Length | 112 |
Max. P | 0.956651 |
Location | 7,002,229 – 7,002,341 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.05 |
Mean single sequence MFE | -38.70 |
Consensus MFE | -31.50 |
Energy contribution | -31.90 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.01 |
Structure conservation index | 0.81 |
SVM decision value | 1.47 |
SVM RNA-class probability | 0.956651 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7002229 112 + 22224390 GCGAAAUGCAAAUAGAAAAUGGCUGGAAAGGCGAGAGUCUGGGU-------GGCUGGCAUGAUCAGGAG-GGAGGAGGCGUGGCGGGGUGUCUGGCACGUCCUUGCCAAGUCAAGUCUCA ((.....)).....((....(((((...((((....))))...)-------))))(((.((((.....(-(.(((.((((((.(((.....))).))))))))).))..)))).))))). ( -34.80) >DroSec_CAF1 3691 108 + 1 GCGAAAUGCAAAUAGAAAAUGGCUGGAAAGGCGAGAGUCUGGGG-------GGCUGGCAGGAGCAGGAG-GG----GGCGUGGCGGGGUGUCUGGCACGUCCUUGCCAAGUCAAGUCUCA ((.....))...((((...(.(((.....))).)...)))).((-------(((((((..(.(((....-((----((((((.(((.....))).))))))))))))..))).)))))). ( -38.30) >DroSim_CAF1 6721 108 + 1 GCGAAAUGCAAAUAGAAAAUGGCUGGAAAGGCGAGAGUCUGGGG-------GGCUGGCAGGAGCAGGAG-GG----GGCGUGGCGGGGUGUCUGGCACGUCCUUGCCAAGUCAAGUCUCA ((.....))...((((...(.(((.....))).)...)))).((-------(((((((..(.(((....-((----((((((.(((.....))).))))))))))))..))).)))))). ( -38.30) >DroEre_CAF1 9402 101 + 1 GCGAAAUGCAAAUAGAAAAUGGCUGGAAAGGCGAGAGUCUGGGG--------GCUGGCAGGAG-------GG----GGCGUGGCGGGGUGUCUGGCACGUCCUUGCCAAGUCAAGUCUCA ((.....))...((((...(.(((.....))).)...))))(((--------((((((.((..-------((----((((((.(((.....))).))))))))..))..))).)))))). ( -39.40) >DroYak_CAF1 18188 116 + 1 GCGAAAUGCAAAUAGAAAAUGGCUGGAGAGGCGAGAGUCUGGGGGGCGGGUGGCUGGCAGGAGAACAAGGGG----GGCGUGGCGGGGUGUCUGGCACGUCCUUGCCAAGUCAAGUCUCA ((.....))...((((...(.(((.....))).)...)))).(((((...((((((((.(.....)...(((----((((((.(((.....))).)))))))))))).))))).))))). ( -42.70) >consensus GCGAAAUGCAAAUAGAAAAUGGCUGGAAAGGCGAGAGUCUGGGG_______GGCUGGCAGGAGCAGGAG_GG____GGCGUGGCGGGGUGUCUGGCACGUCCUUGCCAAGUCAAGUCUCA ((.....))...........((((....((((....))))...........((((((((((...............((((((.(((.....))).)))))))))))).)))).))))... (-31.50 = -31.90 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:16 2006