Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,001,641 – 7,001,757 |
Length | 116 |
Max. P | 0.858677 |
Location | 7,001,641 – 7,001,757 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.60 |
Mean single sequence MFE | -39.96 |
Consensus MFE | -31.80 |
Energy contribution | -32.24 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.09 |
Mean z-score | -1.82 |
Structure conservation index | 0.80 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.858677 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7001641 116 - 22224390 ---ACGCUAUCGAUGAUCCUGGCAGGCGACAGUGUGUGAAGAAGUUCCAACUUGGACUCGAGUGGAUGCUCGACACGCUGCGAUCCGGAAUCUAAAAUGUGGAUUCAUCAACGCCGAA-A ---..((((..........)))).((((.((((((((..((....((((.((((....))))))))..))..)))))))).(((...(((((((.....))))))))))..))))...-. ( -37.30) >DroSec_CAF1 3075 116 - 1 ---ACGCUAUCGAUGAUCCUGGCAGGCGACAGUGUGUGAAGAAGUUGCAACUCGGACUCGAGUGGAUGCUUGACACGCUGCGAUCCGGAAUCUAAAAUGUGGAUUCAUCAUCGCCGAA-A ---.((....(((((((..(((....((.((((((((.(((....(.((.((((....)))))).)..))).))))))))))..)))(((((((.....)))))))))))))).))..-. ( -39.10) >DroSim_CAF1 6098 116 - 1 ---ACGCUAUCGAUGAUCCUGGCAGGCGACAGUGUGUGAAGAAGUUGCAACUCGGACUCGAGUGGAUGCUCGACACGCUGCGAUCCGGAAUCUAAAAUGUGGAUUCAUCAUCGCCGAA-A ---.((....(((((((..(((....((.((((((((...((.((....(((((....)))))....)))).))))))))))..)))(((((((.....)))))))))))))).))..-. ( -37.30) >DroEre_CAF1 8775 117 - 1 ---GCGUUAUCGAUGAUCCUGGCAGGCGACAGUGUGUGAAGAAGUUGCAACUCGGACUCGAGUGGCUGCUCGACACGCUGCGAUCUGGCAUCUAGAAUGUGGAUUCAUCAUCGUUGAACA ---..(((..(((((((..((.((((((.((((((((...((.((.((.(((((....))))).)).)))).)))))))))).)))).))....((((....)))))))))))...))). ( -44.30) >DroYak_CAF1 17519 119 - 1 ACAACACUAUCGAUGAUCCUGGCAGGCGACAGUGUGUGAAGAAGUUCCAACUCGGACUCGAGUGGCUGCUCGACACGCUGCGAUCUGGAAUCUAAAAUGCGGAUUCAUCAGCAUCGAA-A .........((((((...((((((((((.((((((((...((.((.(((.((((....)))))))..)))).)))))))))).))))((((((.......)))))).)))))))))).-. ( -41.80) >consensus ___ACGCUAUCGAUGAUCCUGGCAGGCGACAGUGUGUGAAGAAGUUGCAACUCGGACUCGAGUGGAUGCUCGACACGCUGCGAUCCGGAAUCUAAAAUGUGGAUUCAUCAUCGCCGAA_A ..........(((((((...((....((.((((((((...((.((....(((((....)))))....)))).))))))))))..)).(((((((.....))))))))))))))....... (-31.80 = -32.24 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:15 2006