Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,997,716 – 6,997,836 |
Length | 120 |
Max. P | 0.645707 |
Location | 6,997,716 – 6,997,836 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.56 |
Mean single sequence MFE | -38.65 |
Consensus MFE | -35.71 |
Energy contribution | -35.60 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.05 |
Mean z-score | -1.76 |
Structure conservation index | 0.92 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.645707 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6997716 120 + 22224390 CAUAUGGUUCGCGUCAUGGAAGCUGUACUGUAUAUACCUAUACACUCAUAUGUGGGUGAUGGUUUCGUUUCGGCUGGCGCUACCAAUAUUCAAUGCUCAUGUGUGGGCGUGUGUGCAUUU ....((((..(((((((.(((((...(((((...((((((((........)))))))))))))...))))).).)))))).))))......(((((.((..((....))..)).))))). ( -38.20) >DroSec_CAF1 20114 118 + 1 --AAUGGUUCGGGUUAUGGAAGCUGGACUGUAUAUACCCAUACACUCAUAUGUGGGUGAUGGUUUCGUUUCGGCUGGCGCUACCAAUAUUCAAUGCUCAUGUGUGGGCGUGUGUGCAUUU --...(((((((.((....)).)))))))((((((((((.(((((.......((((((.((((..((((......))))..)))).))))))........))))))).)))))))).... ( -38.46) >DroSim_CAF1 5273 120 + 1 CAUGUGGUUCGGGUUAUGGAAGCUGGACUGUAUAUACCCAUACACUCAUAUGUGGGUGAUGGUUUCGUUUCGGCUGGCGCUACCAAUAUUCAAUGCUCAUGUGUGGGCGUGUGUGCAUUU .(((..((((((.((....)).))))))..))).....(((((.(((((((((((((((((((..((((......))))..))))....))...))))))))))))).)))))....... ( -39.30) >consensus CAUAUGGUUCGGGUUAUGGAAGCUGGACUGUAUAUACCCAUACACUCAUAUGUGGGUGAUGGUUUCGUUUCGGCUGGCGCUACCAAUAUUCAAUGCUCAUGUGUGGGCGUGUGUGCAUUU ....((((..(.(((((.(((((.(((((((...((((((((........))))))))))))))).))))).).)))).).))))......(((((.((..((....))..)).))))). (-35.71 = -35.60 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:13 2006