Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,997,113 – 6,997,233 |
Length | 120 |
Max. P | 0.678712 |
Location | 6,997,113 – 6,997,233 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 99.44 |
Mean single sequence MFE | -36.70 |
Consensus MFE | -36.92 |
Energy contribution | -36.70 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -1.50 |
Structure conservation index | 1.01 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.678712 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6997113 120 + 22224390 UGUCGCCCGGGCGACCAUUAUAAGCAUGAGAUAUUCAUUUGCUUCAUUCUUCACAUAGCCACUGGCAUGGACCACUCCGUUGGCCAGAAGGAGUCGGCAAAUGAGAGACAGAGAAAGAGA .(((((....)))))..................((((((((((...((((((.....(((...))).(((.(((......))))))))))))...))))))))))............... ( -36.60) >DroSec_CAF1 19424 120 + 1 UGUCGCCCGGGCGACCAUUAUAAGCAUGAGAUAUUCAUUUGCUUCAUUCUUCACAUAGCCACUGGCAUGGACCACUCCGUUGGCCAGAAGGAGUCGGCAAAUGAAAGACAGAGAAAGAGA .(((((....)))))..................((((((((((...((((((.....(((...))).(((.(((......))))))))))))...))))))))))............... ( -36.90) >DroSim_CAF1 4579 120 + 1 UGUCGCCCGGGCGACCAUUAUAAGCAUGAGAUAUUCAUUUGCUUCAUUCUUCACAUAGCCACUGGCAUGGACCACUCCGUUGGCCAGAAGGAGUCGGCAAAUGAGAGACAGAGAAAGAGA .(((((....)))))..................((((((((((...((((((.....(((...))).(((.(((......))))))))))))...))))))))))............... ( -36.60) >consensus UGUCGCCCGGGCGACCAUUAUAAGCAUGAGAUAUUCAUUUGCUUCAUUCUUCACAUAGCCACUGGCAUGGACCACUCCGUUGGCCAGAAGGAGUCGGCAAAUGAGAGACAGAGAAAGAGA .(((((....)))))..................((((((((((...((((((.....(((...))).(((.(((......))))))))))))...))))))))))............... (-36.92 = -36.70 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:09 2006