Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,996,069 – 6,996,173 |
Length | 104 |
Max. P | 0.549677 |
Location | 6,996,069 – 6,996,173 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.50 |
Mean single sequence MFE | -25.81 |
Consensus MFE | -17.40 |
Energy contribution | -17.85 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.11 |
Mean z-score | -1.75 |
Structure conservation index | 0.67 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.549677 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6996069 104 + 22224390 UGAGAUAGGUAUCGACACAAUAUAGUCGUGAUGUCCUUUUGCAGACAAAAGAACUCAAGCUCUAAGGCU----------------UUUCUGAGAUAUAUUUCAUUCCUUUUUCCUAUCAU ...((((((....(((........)))(..(((..((((((....))))))..((((((((....))))----------------....))))........)))..).....)))))).. ( -22.00) >DroSec_CAF1 18424 120 + 1 UGAGAUAUGUAUCGACACAAUAUAGUCGGGAUAUCCAUUGGCAGACAAUGGAACUCAAGCUCUAAGGCUUCCUAAUAUUAUCAGUUUUCUGAGUUAUAUUCCAUUCUCUUCUUCUAGCAU .((((........(((........)))(((((((((((((.....))))))).....(((((.((((((.............))))))..))))).))))))..))))............ ( -27.82) >DroSim_CAF1 3575 120 + 1 UGAGAUAUGUAUCGACACAAUAUAGUCGGGAUAUCCAUUGGCAGUCAAUGGAACUCAAGCUCUAAGGCUUCCUAGUAUUAUCAGUUUUCUGAGUUAUAUUCCAUUCUCUUUUUCUAGCAU .((((........(((........)))(((((((((((((.....))))))((((((((((.(((.(((....))).)))..))))...)))))))))))))..))))............ ( -27.60) >consensus UGAGAUAUGUAUCGACACAAUAUAGUCGGGAUAUCCAUUGGCAGACAAUGGAACUCAAGCUCUAAGGCUUCCUA_UAUUAUCAGUUUUCUGAGUUAUAUUCCAUUCUCUUUUUCUAGCAU .((((........(((........)))(((((((((((((.....))))))).((((((((....))))....................))))...))))))..))))............ (-17.40 = -17.85 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:04 2006