Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,994,302 – 6,994,422 |
Length | 120 |
Max. P | 0.509902 |
Location | 6,994,302 – 6,994,422 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.44 |
Mean single sequence MFE | -24.27 |
Consensus MFE | -19.40 |
Energy contribution | -19.84 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.03 |
Mean z-score | -1.84 |
Structure conservation index | 0.80 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.509902 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6994302 120 + 22224390 GUAAUAUUUGAUUGUGAACUCUUUUAGAAUAGUUUUAGAAAUCAAAAAAAAAAAGUUCAUGCAUUUGUUGGCAGACUUUGCCAAGUUUGACAAACAAACGUGCGCUGAUCAAAUCGCCGC .....(((((((((((((((.((((.......................)))).)))))))((((...(((((((...)))))))(((((.....)))))))))...))))))))...... ( -25.10) >DroSec_CAF1 16666 106 + 1 UUAAUAUUUGAUUGUGAACUCUUUUAGAAUAGUUCACGAAAUCAAAC----AAAGUUCAUG----------CAGACUUUGCCAAGUUUGACAAACAAACGUGCGCUGAUCAAAUCGCCGC ......((((((((((((((.((....)).)))))))))..)))))(----((((((....----------..)))))))....(((((.....)))))..(((.((((...)))).))) ( -23.60) >DroSim_CAF1 1803 106 + 1 UUAAUAUUUGAUUGUGAACUCUUUUAGAAUAGUUCACAAAAUCAAAC----AAAGUUCAUG----------CAGACUUUGCCAAGUUUGACAAACAAACGUGCGCUGAUCAAAUCGCCGC ......((((((((((((((.((....)).))))))))..))))))(----((((((....----------..)))))))....(((((.....)))))..(((.((((...)))).))) ( -24.10) >consensus UUAAUAUUUGAUUGUGAACUCUUUUAGAAUAGUUCACGAAAUCAAAC____AAAGUUCAUG__________CAGACUUUGCCAAGUUUGACAAACAAACGUGCGCUGAUCAAAUCGCCGC .....(((((((((((((((.((....)).)))))))................(((.((((..........(((((((....))))))).........)))).)))))))))))...... (-19.40 = -19.84 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:00 2006