Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,993,983 – 6,994,142 |
Length | 159 |
Max. P | 0.897547 |
Location | 6,993,983 – 6,994,102 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.77 |
Mean single sequence MFE | -40.27 |
Consensus MFE | -37.39 |
Energy contribution | -37.50 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -2.34 |
Structure conservation index | 0.93 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.897547 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6993983 119 - 22224390 CCGUCGUUGUUUUAAUAAAUUAAAUUCCGGAAAAUCCACAGGAAGUCUGUCUGUGCAUUUUUGCUUUCUGUUUGGGGGCGGAGGGGAAAA-GGGGGCGUGGACAAGGAAAACGGCGAGCA .(((((((..(((((....)))))((((((.....))..........((((..(((.(((((.(((((((((....))))))))).))))-)...)))..)))).))))))))))).... ( -39.70) >DroSec_CAF1 16392 119 - 1 CCGUCGUUGUUUUAAUAAAUUAAAUUCCGGAAAAUCCACAGGAAGUCUGUCUGUGCAUUUUUGCUUUCUGUUCGGGGGCGGAGGGGAAGU-GGGGGCGUGGACAAGGAAAACGGCGAGCA .(((((((..(((((....)))))((((((.....))..........((((..(((...((..((((((.((((....)))).)))))).-.)).)))..)))).))))))))))).... ( -40.90) >DroSim_CAF1 1510 120 - 1 CCGUCGUUGUUUUAAUAAAUUAAAUUCCGGAAAAUCCACAGGAAGUCUGUCUGUGCAUUUUUGCUUUCUGUUCGGGGGCGGAGGGGAAAAGGGGGGCGUGGACAAGGAAAACGGCGAGCA .(((((((..(((((....)))))((((((.....))..........((((..(((.(((((.(((((((((....))))))))).)))))....)))..)))).))))))))))).... ( -40.20) >consensus CCGUCGUUGUUUUAAUAAAUUAAAUUCCGGAAAAUCCACAGGAAGUCUGUCUGUGCAUUUUUGCUUUCUGUUCGGGGGCGGAGGGGAAAA_GGGGGCGUGGACAAGGAAAACGGCGAGCA .(((((((..(((((....)))))((((((.....))..........((((..(((..((((.(((((((((....))))))))).)))).....)))..)))).))))))))))).... (-37.39 = -37.50 + 0.11)
Location | 6,994,022 – 6,994,142 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -33.57 |
Consensus MFE | -33.59 |
Energy contribution | -33.70 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -1.50 |
Structure conservation index | 1.00 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.665571 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6994022 120 - 22224390 UACUUUUUACUUGGCCGCUAAAGCCGUCUCGCCCUCUUGUCCGUCGUUGUUUUAAUAAAUUAAAUUCCGGAAAAUCCACAGGAAGUCUGUCUGUGCAUUUUUGCUUUCUGUUUGGGGGCG ............(((.((....)).))).(((((((...((((..(((((((....))))..)))..))))......(((((((((.(((....))).....)))))))))..))))))) ( -29.80) >DroSec_CAF1 16431 120 - 1 UACUUUUUACUUGGCGGCUAAAGUCGUCGCGCCCUCUUGUCCGUCGUUGUUUUAAUAAAUUAAAUUCCGGAAAAUCCACAGGAAGUCUGUCUGUGCAUUUUUGCUUUCUGUUCGGGGGCG ............((((((....)))))).(((((((...((((..(((((((....))))..)))..))))......(((((((((.(((....))).....)))))))))..))))))) ( -34.10) >DroSim_CAF1 1550 120 - 1 UACUUUUUACUUGGCGGCUAAAGCCGUCGCGCCCUCUUGUCCGUCGUUGUUUUAAUAAAUUAAAUUCCGGAAAAUCCACAGGAAGUCUGUCUGUGCAUUUUUGCUUUCUGUUCGGGGGCG ............((((((....)))))).(((((((...((((..(((((((....))))..)))..))))......(((((((((.(((....))).....)))))))))..))))))) ( -36.80) >consensus UACUUUUUACUUGGCGGCUAAAGCCGUCGCGCCCUCUUGUCCGUCGUUGUUUUAAUAAAUUAAAUUCCGGAAAAUCCACAGGAAGUCUGUCUGUGCAUUUUUGCUUUCUGUUCGGGGGCG ............((((((....)))))).(((((((...((((..(((((((....))))..)))..))))......(((((((((.(((....))).....)))))))))..))))))) (-33.59 = -33.70 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:00 2006