Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,993,524 – 6,993,724 |
Length | 200 |
Max. P | 0.978523 |
Location | 6,993,524 – 6,993,644 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -43.40 |
Consensus MFE | -43.31 |
Energy contribution | -42.87 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.05 |
Mean z-score | -1.44 |
Structure conservation index | 1.00 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.606014 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6993524 120 + 22224390 GGGCACGUGUUUGGUCAUCAAGAGGGAUUUUCAUGGCAGAAGAGGUCCUGCCUUCUGACUUCCUUCGAUUGGAUUAUUGGCGCUGCUCGGUGGGCGUUUACAACACUUGUUGAGCAGUGG ..((.((.(((..(((.....((((((...(((.(((((........)))))...)))..)))))))))..)))...))))(((((((((..((.((.....)).))..))))))))).. ( -44.00) >DroSec_CAF1 15928 120 + 1 GGGCACGUGUUUGGUCAUCAAGAGGGAUUUCCAUGGCAGAAGAGGUCCUGCCUUCUGACUUCCUUCGAUUGGAUUAUUGGCGCUGCUCGGAGGGCGUUUACGACACUUGUUGAGCAGUGG ..((.((.(((..(((.....((((((..((...(((((........)))))....))..)))))))))..)))...))))(((((((((..((.(((...))).))..))))))))).. ( -41.60) >DroSim_CAF1 1032 120 + 1 GGGCACGUGUUUGGUCAUCAAGAGGGAUUUCCAUGGCAGAAGAGGUCCUGCCUUCUGACUUCCUUCGAUUGGAUUAUUGGCGCUGCUCGGUGGGCGUUUACGACACUUGUUGAGCAGUGG ..((.((.(((..(((.....((((((..((...(((((........)))))....))..)))))))))..)))...))))(((((((((..((.(((...))).))..))))))))).. ( -44.60) >consensus GGGCACGUGUUUGGUCAUCAAGAGGGAUUUCCAUGGCAGAAGAGGUCCUGCCUUCUGACUUCCUUCGAUUGGAUUAUUGGCGCUGCUCGGUGGGCGUUUACGACACUUGUUGAGCAGUGG ..((.((.(((..(((.....((((((..((...(((((........)))))....))..)))))))))..)))...))))(((((((((..((.(((...))).))..))))))))).. (-43.31 = -42.87 + -0.44)
Location | 6,993,604 – 6,993,724 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.11 |
Mean single sequence MFE | -36.50 |
Consensus MFE | -35.55 |
Energy contribution | -35.33 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -2.59 |
Structure conservation index | 0.97 |
SVM decision value | 1.82 |
SVM RNA-class probability | 0.978523 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6993604 120 + 22224390 CGCUGCUCGGUGGGCGUUUACAACACUUGUUGAGCAGUGGUGCAUUUGUAUUUAUCUUUUAUUACAUUUAUUUUAUGCCCUGCCAUUGAUGGUGGCGCACUGAGAAUAAAUUUCAGCUCA ((((((((((..((.((.....)).))..))))))))))(.((...((((............))))((((((((.(((.(..(((....)))..).)))...)))))))).....)).). ( -38.00) >DroSec_CAF1 16008 120 + 1 CGCUGCUCGGAGGGCGUUUACGACACUUGUUGAGCAGUGGUGCAUUUGUAUUUAUCUUUUAUUACAUUUAUUUUAUGCCCUGCCAUUGAUGGUGGCGCACUGAGAAAAAAUGUUAACUCA ((((((((((..((.(((...))).))..))))))))))((((....))))............((((((.((((.(((.(..(((....)))..).)))...)))).))))))....... ( -34.20) >DroSim_CAF1 1112 119 + 1 CGCUGCUCGGUGGGCGUUUACGACACUUGUUGAGCAGUGGUGCAUUUGUAUUUAUCUUUUAUUACAUUUAU-UUAUGCCCUGCCAUUGAUGGUGGCGCACUGAGAAAAAAUUUCAACUCA ((((((((((..((.(((...))).))..))))))))))((((...((((............)))).....-....(((..((((....)))))))))))(((((.....)))))..... ( -37.30) >consensus CGCUGCUCGGUGGGCGUUUACGACACUUGUUGAGCAGUGGUGCAUUUGUAUUUAUCUUUUAUUACAUUUAUUUUAUGCCCUGCCAUUGAUGGUGGCGCACUGAGAAAAAAUUUCAACUCA ((((((((((..((.(((...))).))..))))))))))((((...((((............))))..........(((..((((....))))))))))).(((............))). (-35.55 = -35.33 + -0.22)
Location | 6,993,604 – 6,993,724 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.11 |
Mean single sequence MFE | -27.00 |
Consensus MFE | -25.40 |
Energy contribution | -25.40 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.62 |
Structure conservation index | 0.94 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.585560 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6993604 120 - 22224390 UGAGCUGAAAUUUAUUCUCAGUGCGCCACCAUCAAUGGCAGGGCAUAAAAUAAAUGUAAUAAAAGAUAAAUACAAAUGCACCACUGCUCAACAAGUGUUGUAAACGCCCACCGAGCAGCG ...((((.........(((.((..((((.......)))).((((..........((((............))))..((((.((((........)))).))))...)))))).))))))). ( -28.30) >DroSec_CAF1 16008 120 - 1 UGAGUUAACAUUUUUUCUCAGUGCGCCACCAUCAAUGGCAGGGCAUAAAAUAAAUGUAAUAAAAGAUAAAUACAAAUGCACCACUGCUCAACAAGUGUCGUAAACGCCCUCCGAGCAGCG ((((..((....))..))))(((((((.(((....)))...)))..........((((............))))...))))..((((((.....((((.....)))).....)))))).. ( -26.10) >DroSim_CAF1 1112 119 - 1 UGAGUUGAAAUUUUUUCUCAGUGCGCCACCAUCAAUGGCAGGGCAUAA-AUAAAUGUAAUAAAAGAUAAAUACAAAUGCACCACUGCUCAACAAGUGUCGUAAACGCCCACCGAGCAGCG ((((..((....))..))))(((((((.(((....)))...)))....-.....((((............))))...))))..((((((.....((((.....)))).....)))))).. ( -26.60) >consensus UGAGUUGAAAUUUUUUCUCAGUGCGCCACCAUCAAUGGCAGGGCAUAAAAUAAAUGUAAUAAAAGAUAAAUACAAAUGCACCACUGCUCAACAAGUGUCGUAAACGCCCACCGAGCAGCG ((((............))))(((((((.(((....)))...)))..........((((............))))...))))..((((((.....((((.....)))).....)))))).. (-25.40 = -25.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:58 2006