Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,992,691 – 6,992,850 |
Length | 159 |
Max. P | 0.922196 |
Location | 6,992,691 – 6,992,810 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 99.44 |
Mean single sequence MFE | -46.40 |
Consensus MFE | -42.87 |
Energy contribution | -42.87 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.61 |
Structure conservation index | 0.92 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.922196 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6992691 119 + 22224390 AGAGAUCACUCCCCGUGCCGC-UGCUAGCACGCUUCAUUAUCCCGGGGUUGCGAUUUGCCUCGACGACCUCGGGGCCCGGUCACUAAUCAAGUUGACCACUGGCCAGUCGCACUCGUACC .(((....)))...((((.((-((((((............((((((((((((((......))).)))))))))))...(((((((.....)).))))).)))).)))).))))....... ( -46.20) >DroSec_CAF1 15095 119 + 1 AGAGAUCACUCCCCGUGCCGC-UGCUAGCACGCUUCAUUAUCCCGGGGUUGCGAUUUGCCUCGACGACCUCGGGGCCCGGUCACUAAUCAAGUUGACCACUGGCCAGUCGCACUCGUACC .(((....)))...((((.((-((((((............((((((((((((((......))).)))))))))))...(((((((.....)).))))).)))).)))).))))....... ( -46.20) >DroSim_CAF1 205 120 + 1 AGAGAUCACUCCCCGUGCCGCUUGCUAGCACGCUUCAUUAUCCCGGGGUUGCGAUUUGCCUCGACGACCUCGGGGCCCGGUCACUAAUCAAGUUGACCACUGGCCAGUCGCACUCGUACC .(((....)))...((((.(((.(((((............((((((((((((((......))).)))))))))))...(((((((.....)).))))).))))).))).))))....... ( -46.80) >consensus AGAGAUCACUCCCCGUGCCGC_UGCUAGCACGCUUCAUUAUCCCGGGGUUGCGAUUUGCCUCGACGACCUCGGGGCCCGGUCACUAAUCAAGUUGACCACUGGCCAGUCGCACUCGUACC .(((....)))...((((.((..(((((............((((((((((((((......))).)))))))))))...(((((((.....)).))))).)))))..)).))))....... (-42.87 = -42.87 + 0.00)
Location | 6,992,730 – 6,992,850 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 100.00 |
Mean single sequence MFE | -40.50 |
Consensus MFE | -40.50 |
Energy contribution | -40.50 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.50 |
Structure conservation index | 1.00 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.660681 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6992730 120 + 22224390 UCCCGGGGUUGCGAUUUGCCUCGACGACCUCGGGGCCCGGUCACUAAUCAAGUUGACCACUGGCCAGUCGCACUCGUACCCCUAUGACCCAUGUUGACCAACCCCCUGCAUUUUCUGGGA ..((((((((((((......))).)))))))))((((.(((((((.....)).)))))...)))).((((((.(((((....)))))....)).)))).....(((..........))). ( -40.50) >DroSec_CAF1 15134 120 + 1 UCCCGGGGUUGCGAUUUGCCUCGACGACCUCGGGGCCCGGUCACUAAUCAAGUUGACCACUGGCCAGUCGCACUCGUACCCCUAUGACCCAUGUUGACCAACCCCCUGCAUUUUCUGGGA ..((((((((((((......))).)))))))))((((.(((((((.....)).)))))...)))).((((((.(((((....)))))....)).)))).....(((..........))). ( -40.50) >DroSim_CAF1 245 120 + 1 UCCCGGGGUUGCGAUUUGCCUCGACGACCUCGGGGCCCGGUCACUAAUCAAGUUGACCACUGGCCAGUCGCACUCGUACCCCUAUGACCCAUGUUGACCAACCCCCUGCAUUUUCUGGGA ..((((((((((((......))).)))))))))((((.(((((((.....)).)))))...)))).((((((.(((((....)))))....)).)))).....(((..........))). ( -40.50) >consensus UCCCGGGGUUGCGAUUUGCCUCGACGACCUCGGGGCCCGGUCACUAAUCAAGUUGACCACUGGCCAGUCGCACUCGUACCCCUAUGACCCAUGUUGACCAACCCCCUGCAUUUUCUGGGA ..((((((((((((......))).)))))))))((((.(((((((.....)).)))))...)))).((((((.(((((....)))))....)).)))).....(((..........))). (-40.50 = -40.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:46 2006