Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,952,389 – 6,952,500 |
Length | 111 |
Max. P | 0.984028 |
Location | 6,952,389 – 6,952,500 |
---|---|
Length | 111 |
Sequences | 3 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 93.92 |
Mean single sequence MFE | -28.90 |
Consensus MFE | -27.07 |
Energy contribution | -27.07 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -4.19 |
Structure conservation index | 0.94 |
SVM decision value | 1.96 |
SVM RNA-class probability | 0.984028 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6952389 111 + 22224390 GGCAAAGCAACUAAAAUCGAAAUAACGAUAUCGUUAUCUCACGAUCGUUUUAUGACAAACAAAUUGGACCGUUUCCCCACCCAUUUAAGUUGCUUUGCCUCUUUCGAUACC ((((((((((((.((((.((.((((((....)))))).))(((.(((((....)))...(.....))).)))..........)))).))))))))))))............ ( -29.80) >DroSec_CAF1 1951 107 + 1 GGCAAAGCAACUAAAAUCGAAAUUACGAUAUCGUUAUCUCACGAUCGUUUUAUGACAAACAAAUUGGAUCGUUUCCC----CAUUCAAGUUGCUUUGCCUUUUACGAUACC ((((((((((((......((.((.(((....))).)).))(((((((((....)))...(.....))))))).....----......))))))))))))............ ( -29.80) >DroSim_CAF1 1942 107 + 1 GGCAAAGCAACUAAAAUCGAAAUUACGAUAUCGUUAUCUCACGAUCGUUUUAUGACAAACAAAUUGGACCGUUUCCC----CAUUCAAGUUGCUUUGCCUUUUACGAAACC ((((((((((((....(((.((..((((..((((......)))))))).)).)))..........(((.....))).----......))))))))))))............ ( -27.10) >consensus GGCAAAGCAACUAAAAUCGAAAUUACGAUAUCGUUAUCUCACGAUCGUUUUAUGACAAACAAAUUGGACCGUUUCCC____CAUUCAAGUUGCUUUGCCUUUUACGAUACC ((((((((((((....(((.....((((..((((......))))))))....)))..........(((.....)))...........))))))))))))............ (-27.07 = -27.07 + -0.00)
Location | 6,952,389 – 6,952,500 |
---|---|
Length | 111 |
Sequences | 3 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 93.92 |
Mean single sequence MFE | -36.93 |
Consensus MFE | -34.27 |
Energy contribution | -33.83 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.06 |
Mean z-score | -4.36 |
Structure conservation index | 0.93 |
SVM decision value | 1.80 |
SVM RNA-class probability | 0.977920 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6952389 111 - 22224390 GGUAUCGAAAGAGGCAAAGCAACUUAAAUGGGUGGGGAAACGGUCCAAUUUGUUUGUCAUAAAACGAUCGUGAGAUAACGAUAUCGUUAUUUCGAUUUUAGUUGCUUUGCC ....((....))((((((((((((.((((.((...(....)...))...((((((......))))))...((((((((((....)))))))))))))).)))))))))))) ( -40.00) >DroSec_CAF1 1951 107 - 1 GGUAUCGUAAAAGGCAAAGCAACUUGAAUG----GGGAAACGAUCCAAUUUGUUUGUCAUAAAACGAUCGUGAGAUAACGAUAUCGUAAUUUCGAUUUUAGUUGCUUUGCC ............((((((((((((.((((.----(..(.(((((......(((((......)))))(((((......))))))))))..)..).)))).)))))))))))) ( -35.70) >DroSim_CAF1 1942 107 - 1 GGUUUCGUAAAAGGCAAAGCAACUUGAAUG----GGGAAACGGUCCAAUUUGUUUGUCAUAAAACGAUCGUGAGAUAACGAUAUCGUAAUUUCGAUUUUAGUUGCUUUGCC ............((((((((((((.((((.----(..(.(((((......(((((......)))))(((((......))))))))))..)..).)))).)))))))))))) ( -35.10) >consensus GGUAUCGUAAAAGGCAAAGCAACUUGAAUG____GGGAAACGGUCCAAUUUGUUUGUCAUAAAACGAUCGUGAGAUAACGAUAUCGUAAUUUCGAUUUUAGUUGCUUUGCC ............((((((((((((.((((..........((((((...(((((.....)))))..))))))(((((.(((....))).))))).)))).)))))))))))) (-34.27 = -33.83 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:45 2006