Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,950,548 – 6,950,649 |
Length | 101 |
Max. P | 0.740726 |
Location | 6,950,548 – 6,950,649 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 73.45 |
Mean single sequence MFE | -29.93 |
Consensus MFE | -16.47 |
Energy contribution | -16.55 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.19 |
Mean z-score | -1.61 |
Structure conservation index | 0.55 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.740726 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6950548 101 - 22224390 AUCCUUGCUGAAU---GU----------AUGUACCUCGUUUAAAUGGACGUCGUAGCAUUUGUC--GCCCAUUUCCGCA----UCCGCCUCGUCCUCGCUGCCCGAGGACAACUCCUCCA .....((((((((---(.----------........))))))(((((.((.((.......)).)--).)))))...)))----........(((((((.....))))))).......... ( -22.70) >DroSec_CAF1 158 111 - 1 AUCCUUGCUGAAU---GUAUGUAUGUGUAUGUACCUCGUUCAAAUGGACGUCGUAGCACUUAUC--GCCCGUUUCCGCA----UCCGCCUCGUCCUCGCUGCUCGAGGACAACUCCUCCA .....(((.((((---(..((...((((...(((..(((((....)))))..)))))))....)--)..)))))..)))----........(((((((.....))))))).......... ( -28.80) >DroSim_CAF1 158 109 - 1 AUCCUUGCUGACU---GUAUU--UGUGUAUGUACCUCGUUCAAAUGGACGUCGUAGCACUUAUC--GCCCGUUUCCGCA----UCCGCCUCGUCCUCGCUACCCGAGGACAACUCCUCCA .....(((.(((.---((((.--.((((...(((..(((((....)))))..)))))))..)).--))..)))...)))----........(((((((.....))))))).......... ( -26.60) >DroEre_CAF1 158 92 - 1 --------------------U--GGCGGAUGUACCUCGUUCAAAUGGACGUCGUAGCACUUGUC--AGCCAAUUCCGCA----UCCGCCUCGUCCUCGCUGCCGGAGGACAACUCCUCCA --------------------.--(((((((((((..(((((....)))))..)).((.......--.)).......)))----))))))..((((((.......)))))).......... ( -34.30) >DroYak_CAF1 170 111 - 1 ACCCUUUUUUAGUAGUCUA-U--GGUGGAUGUACCUCGUUCAAAUGGACGUCGUAGCACUUGUC--ACCGAUUUCCGCG----UCCGCUUCGUCCUCGCUGCCGGAGGACAACUCCUCCA ...........(((((...-.--(((((((((....(((((....)))))(((..((....)).--..))).....)))----))))))........))))).((((((....)))))). ( -31.80) >DroAna_CAF1 161 97 - 1 -----------------------AGAUGACGCACCUCUUCCAGCUGGACGGCAUAGCACUUGUCCGGCUCAUCGCCGUUUCUGUCCUGGUCGUCCUCGCUAUCGGAGGACAUCUCCUCCA -----------------------..................(((.(((((((.(((.((..(..((((.....))))..)..)).))))))))))..)))...((((((....)))))). ( -35.40) >consensus AUCCUUGCUGA_U___GU__U__GGUGGAUGUACCUCGUUCAAAUGGACGUCGUAGCACUUGUC__GCCCAUUUCCGCA____UCCGCCUCGUCCUCGCUGCCCGAGGACAACUCCUCCA .............................(((((..(((((....)))))..)).))).................................((((((.......)))))).......... (-16.47 = -16.55 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:43 2006