Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 865,693 – 865,836 |
Length | 143 |
Max. P | 0.989140 |
Location | 865,693 – 865,810 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 87.18 |
Mean single sequence MFE | -40.07 |
Consensus MFE | -37.87 |
Energy contribution | -38.43 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.07 |
Mean z-score | -2.22 |
Structure conservation index | 0.95 |
SVM decision value | 1.73 |
SVM RNA-class probability | 0.974226 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 865693 117 + 22224390 AUUCAUGAGACCUUAUCUCACCUAAAGCCCACUUAUUUUCUCCCUCUGCAUUCCCAUUCCCGAUGGAGCCUUGGCGUCAUUUCGGCGACGGCGGCUAAGUGGGCGUGGGACUGCGUC .....(((((.....)))))...........................(((.((((((.((((....((((..(.((((........)))).)))))...)))).)))))).)))... ( -37.80) >DroEre_CAF1 72126 116 + 1 UUUACUGAGAACUUAUUUCA-CUACAGCCCUAUUAUUUUCUUCCUCUGCAAUCCCAUUCCCGAUGGAGCCUUGUCGUCAUUUCGGCGACGGUGGCUAAGUGGUCGUGGGACUGCGUC .....(((((.....)))))-..........................(((.((((((..(((....((((((((((((.....)))))))).))))...)))..)))))).)))... ( -37.00) >DroYak_CAF1 68294 117 + 1 UUUGCUGAGUCCUUGUUUCAACAACAGCCGUACUGUUUUCUCCCUCUGCACUCCCAUUCCCGAUGGAGCCUUGUCGCCAUUUCGGCGACGGUGGCUAAGUGGGCGUGGGACUGCGUC ...((((.....((((....))))))))...................(((.((((((.((((....((((((((((((.....)))))))).))))...)))).)))))).)))... ( -45.40) >consensus UUUACUGAGACCUUAUUUCA_CUACAGCCCUAUUAUUUUCUCCCUCUGCAAUCCCAUUCCCGAUGGAGCCUUGUCGUCAUUUCGGCGACGGUGGCUAAGUGGGCGUGGGACUGCGUC .....(((((.....)))))...........................(((.((((((.((((....((((((((((((.....)))))))).))))...)))).)))))).)))... (-37.87 = -38.43 + 0.56)
Location | 865,733 – 865,836 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 81.31 |
Mean single sequence MFE | -46.50 |
Consensus MFE | -39.41 |
Energy contribution | -39.97 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.06 |
Mean z-score | -2.56 |
Structure conservation index | 0.85 |
SVM decision value | 2.15 |
SVM RNA-class probability | 0.989140 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 865733 103 + 22224390 UCCCUCUGCAUUCCCAUUCCCGAUGGAGCCUUGGCGUCAUUUCGGCGACGGCGGCUAAGUGGGCGUGGGACUGCGUCUAGGCCCAAAACUCCAGGACUCUAGG-------------- ..(((..(((.((((((.((((....((((..(.((((........)))).)))))...)))).)))))).)))((((.((.........)).))))...)))-------------- ( -39.40) >DroEre_CAF1 72165 117 + 1 UUCCUCUGCAAUCCCAUUCCCGAUGGAGCCUUGUCGUCAUUUCGGCGACGGUGGCUAAGUGGUCGUGGGACUGCGUCUAUGCCCAGGACUCCUGGACUCCGGGACUCCUGCACUCCC .......(((.((((((..(((....((((((((((((.....)))))))).))))...)))..)))))).))).........(((((.((((((...)))))).)))))....... ( -51.50) >DroYak_CAF1 68334 98 + 1 UCCCUCUGCACUCCCAUUCCCGAUGGAGCCUUGUCGCCAUUUCGGCGACGGUGGCUAAGUGGGCGUGGGACUGCGUCUAGGCCCAGAACUCCAGGGCU------------------- .......(((.((((((.((((....((((((((((((.....)))))))).))))...)))).)))))).))).....(((((.........)))))------------------- ( -48.60) >consensus UCCCUCUGCAAUCCCAUUCCCGAUGGAGCCUUGUCGUCAUUUCGGCGACGGUGGCUAAGUGGGCGUGGGACUGCGUCUAGGCCCAGAACUCCAGGACUC__GG______________ .......(((.((((((.((((....((((((((((((.....)))))))).))))...)))).)))))).)))((((.((.........)).)))).................... (-39.41 = -39.97 + 0.56)
Location | 865,733 – 865,836 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 81.31 |
Mean single sequence MFE | -43.13 |
Consensus MFE | -32.25 |
Energy contribution | -31.70 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.15 |
Mean z-score | -1.67 |
Structure conservation index | 0.75 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.687643 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 865733 103 - 22224390 --------------CCUAGAGUCCUGGAGUUUUGGGCCUAGACGCAGUCCCACGCCCACUUAGCCGCCGUCGCCGAAAUGACGCCAAGGCUCCAUCGGGAAUGGGAAUGCAGAGGGA --------------.((((.((((.........))))))))..(((.(((((..(((....((((..(((((......)))))....)))).....)))..))))).)))....... ( -38.70) >DroEre_CAF1 72165 117 - 1 GGGAGUGCAGGAGUCCCGGAGUCCAGGAGUCCUGGGCAUAGACGCAGUCCCACGACCACUUAGCCACCGUCGCCGAAAUGACGACAAGGCUCCAUCGGGAAUGGGAUUGCAGAGGAA ....((.(((((.(((.((...)).))).))))).))......(((((((((...((....((((..(((((......)))))....)))).....))...)))))))))....... ( -46.20) >DroYak_CAF1 68334 98 - 1 -------------------AGCCCUGGAGUUCUGGGCCUAGACGCAGUCCCACGCCCACUUAGCCACCGUCGCCGAAAUGGCGACAAGGCUCCAUCGGGAAUGGGAGUGCAGAGGGA -------------------..((((...((.(((....)))))(((.(((((..(((....((((...((((((.....))))))..)))).....)))..))))).)))..)))). ( -44.50) >consensus ______________CC__GAGUCCUGGAGUUCUGGGCCUAGACGCAGUCCCACGCCCACUUAGCCACCGUCGCCGAAAUGACGACAAGGCUCCAUCGGGAAUGGGAAUGCAGAGGGA ....................((((.((...)).))))......(((.(((((..(((....((((..(((((......)))))....)))).....)))..))))).)))....... (-32.25 = -31.70 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:12 2006