Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,948,708 – 6,948,802 |
Length | 94 |
Max. P | 0.852623 |
Location | 6,948,708 – 6,948,802 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 78.87 |
Mean single sequence MFE | -39.87 |
Consensus MFE | -24.74 |
Energy contribution | -24.25 |
Covariance contribution | -0.49 |
Combinations/Pair | 1.42 |
Mean z-score | -1.91 |
Structure conservation index | 0.62 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.852623 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6948708 94 + 22224390 GGAUUGCUGCCGAUCGGCGGCCAGUUUUCGAGUGCGACUUGUUGUCGCACGGUUCUGAAAGAUCGUCUCGUGCUGCGUGGCAUCUGCCAGAGCC (((((((((((....))))).))))))....(((((((.....)))))))(((((((..((((.(((.((.....)).)))))))..))))))) ( -44.40) >DroPse_CAF1 492 94 + 1 CGACUCCAGUCGAUCGGCGGCCAGUUUCCUGGUGCGGCUUGUCGUUGCACGGUUUACGAAGUUCCCCUCGGGAGCUGGCGCCUCUGGGGCGACA ((.((((((......((((.(((((((((..(((((((.....)))))))((...........))....))))))))))))).))))))))... ( -41.40) >DroSec_CAF1 448 94 + 1 GGAUUGUUGUCGAUCGGCGGCCAGUUUUCGAGUGCGACUUGUUGUCGCACGGUUCUGGAAGAUCGUCUCGUGCUGCGUGGCAUCUGCCAGAGCU (((((((((((....))))).))))))....(((((((.....)))))))((((((((.((((.(((.((.....)).))))))).)))))))) ( -40.50) >DroSim_CAF1 436 94 + 1 GGAUUGUUGUCGAUCGGCGGCCAGUUUUCGAGUGCGACUUGUUGUCGCACGGUUCUGGAAGAUCGUCUCGUGCUGCGUGGCAUCUGCCAGAGCU (((((((((((....))))).))))))....(((((((.....)))))))((((((((.((((.(((.((.....)).))))))).)))))))) ( -40.50) >DroEre_CAF1 2595 94 + 1 GGAUUGCUGUCGAUCGGCGGCCAGUUUUCGAGUGCGACUCGUCGUCGCUCGGUUCUGGAAGAUCGUCUCGUGCUGCGUAGGAUCUGUCAGUGCC (((((((((((....))))).))))))..((((((((....))).)))))(((.(((..(((((.(..((.....)).).)))))..))).))) ( -34.70) >DroPer_CAF1 483 94 + 1 UGACUCCAGUCGAUCGGCGGCCAGUUUCCUGGUGCGGCUUGUCGUUGCACGGUUUACGAAGUUCCCCUCGGGAACUGGUGCCUCUGGGGCGACA .(.((((((......((((.(((((((((..(((((((.....)))))))((...........))....))))))))))))).))))))).... ( -37.70) >consensus GGAUUGCUGUCGAUCGGCGGCCAGUUUUCGAGUGCGACUUGUCGUCGCACGGUUCUGGAAGAUCGUCUCGUGCUGCGUGGCAUCUGCCAGAGCA .((((((((((....))))).))))).....(((((((.....)))))))(((((((..((........(((((....)))))))..))))))) (-24.74 = -24.25 + -0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:42 2006