Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,947,521 – 6,947,634 |
Length | 113 |
Max. P | 0.970694 |
Location | 6,947,521 – 6,947,634 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 95.27 |
Mean single sequence MFE | -45.87 |
Consensus MFE | -40.34 |
Energy contribution | -40.57 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.06 |
Mean z-score | -3.01 |
Structure conservation index | 0.88 |
SVM decision value | 1.30 |
SVM RNA-class probability | 0.939017 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6947521 113 + 22224390 CGCGGACUGGCUAGUGGUGGGCAGGGCGGCGAUGUAACAUCGAUAGCUCGCCGUUGUAACGGCAAGCCAAGUCAUCGAUGGCGCACCAGCGAAGUGCCAUCUCUAGAAAGUAA .....(((..((((.(((((((.((((..(((((...)))))...))))(((((....)))))..)))....))))((((((((.........)))))))).))))..))).. ( -45.80) >DroSec_CAF1 6716 112 + 1 CGCGGACUUGCUAGUGAUG-GCAGGGCGGCGAUGUAACAUCGAUAGCUCGCCGUUGUAACGGCGAACCAAGUCAUCGAUGGCGCACUAGCGAAGUGUCAUCUCUAGAAAGUAA .....((((.((((.((((-((.((((..(((((...)))))...))))(((((....))))).......))))))((((((((.........)))))))).)))).)))).. ( -44.10) >DroSim_CAF1 7941 112 + 1 CGCGGACUUGCUAGUGAUG-GCAGGGCGGCGAUGUAACAUCGAUAGCUCGCCGUUGUAACGGCGAACCAAGUCAUCGAUGGGGCACUAGCGAAGUGCCAUCUCUAGAAAGUAA .....((((.((((.((((-(((...((.(..(((..(((((((..((((((((....))))))).....)..)))))))..)))...)))...))))))).)))).)))).. ( -47.70) >consensus CGCGGACUUGCUAGUGAUG_GCAGGGCGGCGAUGUAACAUCGAUAGCUCGCCGUUGUAACGGCGAACCAAGUCAUCGAUGGCGCACUAGCGAAGUGCCAUCUCUAGAAAGUAA .....((((.((((.((((.(((...((.(..(((..(((((((..((((((((....)))))).....))..)))))))..)))...)))...))))))).)))).)))).. (-40.34 = -40.57 + 0.23)
Location | 6,947,521 – 6,947,634 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 95.27 |
Mean single sequence MFE | -40.67 |
Consensus MFE | -38.13 |
Energy contribution | -38.13 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.08 |
Mean z-score | -2.74 |
Structure conservation index | 0.94 |
SVM decision value | 1.66 |
SVM RNA-class probability | 0.970694 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6947521 113 - 22224390 UUACUUUCUAGAGAUGGCACUUCGCUGGUGCGCCAUCGAUGACUUGGCUUGCCGUUACAACGGCGAGCUAUCGAUGUUACAUCGCCGCCCUGCCCACCACUAGCCAGUCCGCG ..(((..((((.(((((((((.....)))))..(((((((.....((((((((((....)))))))))))))))))...))))((......))......))))..)))..... ( -39.70) >DroSec_CAF1 6716 112 - 1 UUACUUUCUAGAGAUGACACUUCGCUAGUGCGCCAUCGAUGACUUGGUUCGCCGUUACAACGGCGAGCUAUCGAUGUUACAUCGCCGCCCUGC-CAUCACUAGCAAGUCCGCG ..((((.((((.((((.((...(((....))).(((((((.....((((((((((....)))))))))))))))))..............)).-)))).)))).))))..... ( -37.90) >DroSim_CAF1 7941 112 - 1 UUACUUUCUAGAGAUGGCACUUCGCUAGUGCCCCAUCGAUGACUUGGUUCGCCGUUACAACGGCGAGCUAUCGAUGUUACAUCGCCGCCCUGC-CAUCACUAGCAAGUCCGCG ..((((.((((.(((((((...((...(((...(((((((.....((((((((((....)))))))))))))))))...)))...))...)))-)))).)))).))))..... ( -44.40) >consensus UUACUUUCUAGAGAUGGCACUUCGCUAGUGCGCCAUCGAUGACUUGGUUCGCCGUUACAACGGCGAGCUAUCGAUGUUACAUCGCCGCCCUGC_CAUCACUAGCAAGUCCGCG ..((((.((((.(((((((((.....)))))..(((((((.....((((((((((....)))))))))))))))))...))))((......))......)))).))))..... (-38.13 = -38.13 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:41 2006