Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,934,158 – 6,934,254 |
Length | 96 |
Max. P | 0.917276 |
Location | 6,934,158 – 6,934,254 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 88.25 |
Mean single sequence MFE | -18.16 |
Consensus MFE | -15.74 |
Energy contribution | -16.14 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.74 |
Structure conservation index | 0.87 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.917276 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6934158 96 + 22224390 ACGAAAA----CAAAAGUGAGAUUAGGAAAUCUCAAAUACUCGCUGGCAAGGUCACACUAAUUUCGUGAGCUUGAUUUCAUUUUGCACAGUAAAAAAAUA ..((((.----....(((((((((.((.....)).))).))))))..((((.((((.........)))).)))).)))).((((((...))))))..... ( -19.40) >DroSec_CAF1 19256 96 + 1 ACGAAAA----GAAAAGUGAGAUUAGGAAACCUCAAAUACUCGCUGGCAAGGUCACACCAAAUUCGUGAGCUUGAUUUCAUAUUGCACAGUAAAAAAAUA ..((((.----....((((((((((((...)))..))).))))))..((((.((((.........)))).)))).))))..................... ( -18.90) >DroSim_CAF1 18106 96 + 1 ACGAAAA----GAAAAGUGAGAUUAGGAAACCUCAAAUACUCGCUGGCAAGGUCACACCAAAUUCGUGAGCUUGAUUUCAUAUUGCACAGUAAAAAAAUA ..((((.----....((((((((((((...)))..))).))))))..((((.((((.........)))).)))).))))..................... ( -18.90) >DroEre_CAF1 27550 91 + 1 ACGAAAAA---AAAAAGUGAGACUGAGAAAUCUCAAAUACUCGCUGGCAAGGUCACACUAAUUUCAUGAGCUUGUUUUCAUUUUGCACAAUAAA------ ..((((..---....((((((..((((....))))....)))))).(((((.(((...........))).)))))))))...............------ ( -19.10) >DroYak_CAF1 20030 100 + 1 ACGAAAAAAAAAAAAAGUGAGACUCAGAAAUCUCAAAUACUCGCUGGCAAGGUCACACUAUAUUCAUGAGCUUGUUUUCAUUUUGCACAAUAAAAAAAUA ..((((.........((((((.....((....)).....)))))).(((((.(((...........))).)))))))))..................... ( -14.50) >consensus ACGAAAA____AAAAAGUGAGAUUAGGAAAUCUCAAAUACUCGCUGGCAAGGUCACACUAAAUUCGUGAGCUUGAUUUCAUUUUGCACAGUAAAAAAAUA ..((((.........((((((.....((....)).....))))))..((((.((((.........)))).)))).))))..................... (-15.74 = -16.14 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:31 2006