Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,933,854 – 6,933,952 |
Length | 98 |
Max. P | 0.998452 |
Location | 6,933,854 – 6,933,952 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 95.36 |
Mean single sequence MFE | -36.36 |
Consensus MFE | -34.18 |
Energy contribution | -34.58 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.97 |
Structure conservation index | 0.94 |
SVM decision value | 3.11 |
SVM RNA-class probability | 0.998452 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6933854 98 + 22224390 GUUGGCGAGGAGACCAUGGGGGGCGGAGCUGGCGCGUUUGCCCCCCCGUGCAAAUAAAAACUACAUACUAUCUUAAGAGUCAGUGAGUGUCUUUCGCU--- ...((((((.(((((((((((((((((((....)).)))).))))))))).........(((.(((....((....))....))))))))))))))))--- ( -36.20) >DroSec_CAF1 18951 98 + 1 GUUGGCGAGGAGACCAUGGGGGGCGGAGCUGGCGCCUUUGCCCCCCCGUGCAAAUAAAAACUACAUACUAUCUUAAGAGUCAGUGAGUGUCUUUCGCU--- ...((((((.(((((((((((((((((((....).))))).))))))))).........(((.(((....((....))....))))))))))))))))--- ( -36.20) >DroSim_CAF1 17801 98 + 1 GUUGGCGAGGAGACCAUGGGGGGCGGAGCUGGCUCCAUUGCCCCCCCGUGCAAAUAAAAACUACAUACUAUCUUAAGAGUCAGUGAGUGUCUUUCGCU--- ...((((((.((((((((((((((((((....))))...).))))))))).........(((.(((....((....))....))))))))))))))))--- ( -36.90) >DroEre_CAF1 27249 98 + 1 GAUGGCGAGGAGACCAUGGGGGGCGGAGCUGGCGCGUUUGCCCCCCCGUGCAAAUUAAAACUACAUAAUAUCUAAAGAGUCAGUGAGUGUCUUUCGCU--- ...((((((.(((((((((((((((((((....)).)))).))))))))).........(((.(((....((....))....))))))))))))))))--- ( -36.20) >DroYak_CAF1 19702 101 + 1 GUUGGCGAGGAGACCAUGGGGGGCGGAGCUGGCGCGUUUGCCCCCCCGUGCAAAUUAAAACUACAUACUAUCUAAAGAGUCAGUGAGUGUCUUUCGCUUGU ...((((((.(((((((((((((((((((....)).)))).)))))))))............((.((((..((....))..)))).))))))))))))... ( -36.30) >consensus GUUGGCGAGGAGACCAUGGGGGGCGGAGCUGGCGCGUUUGCCCCCCCGUGCAAAUAAAAACUACAUACUAUCUUAAGAGUCAGUGAGUGUCUUUCGCU___ ...((((((.(((((((((((((((((((....)).)))).))))))))).........(((.(((....((....))....))))))))))))))))... (-34.18 = -34.58 + 0.40)
Location | 6,933,854 – 6,933,952 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 95.36 |
Mean single sequence MFE | -32.42 |
Consensus MFE | -29.08 |
Energy contribution | -29.28 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.05 |
Structure conservation index | 0.90 |
SVM decision value | 2.69 |
SVM RNA-class probability | 0.996376 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6933854 98 - 22224390 ---AGCGAAAGACACUCACUGACUCUUAAGAUAGUAUGUAGUUUUUAUUUGCACGGGGGGGCAAACGCGCCAGCUCCGCCCCCCAUGGUCUCCUCGCCAAC ---.((((.((((....((((.((....)).)))).(((((.......)))))..(((((((....((....))...)))))))...))))..)))).... ( -31.40) >DroSec_CAF1 18951 98 - 1 ---AGCGAAAGACACUCACUGACUCUUAAGAUAGUAUGUAGUUUUUAUUUGCACGGGGGGGCAAAGGCGCCAGCUCCGCCCCCCAUGGUCUCCUCGCCAAC ---.((((.((((....((((.((....)).)))).(((((.......)))))..(((((((...(((....)))..)))))))...))))..)))).... ( -33.20) >DroSim_CAF1 17801 98 - 1 ---AGCGAAAGACACUCACUGACUCUUAAGAUAGUAUGUAGUUUUUAUUUGCACGGGGGGGCAAUGGAGCCAGCUCCGCCCCCCAUGGUCUCCUCGCCAAC ---.((((.((((....((((.((....)).)))).(((((.......)))))..(((((((...((((....)))))))))))...))))..)))).... ( -35.50) >DroEre_CAF1 27249 98 - 1 ---AGCGAAAGACACUCACUGACUCUUUAGAUAUUAUGUAGUUUUAAUUUGCACGGGGGGGCAAACGCGCCAGCUCCGCCCCCCAUGGUCUCCUCGCCAUC ---.((((.((((.....((((....))))......(((((.......)))))..(((((((....((....))...)))))))...))))..)))).... ( -30.60) >DroYak_CAF1 19702 101 - 1 ACAAGCGAAAGACACUCACUGACUCUUUAGAUAGUAUGUAGUUUUAAUUUGCACGGGGGGGCAAACGCGCCAGCUCCGCCCCCCAUGGUCUCCUCGCCAAC ....((((.(((((((..((((....))))..))).(((((.......)))))..(((((((....((....))...)))))))...))))..)))).... ( -31.40) >consensus ___AGCGAAAGACACUCACUGACUCUUAAGAUAGUAUGUAGUUUUUAUUUGCACGGGGGGGCAAACGCGCCAGCUCCGCCCCCCAUGGUCUCCUCGCCAAC ....((((.((((.......................(((((.......)))))..(((((((....((....))...)))))))...))))..)))).... (-29.08 = -29.28 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:30 2006