Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,933,270 – 6,933,377 |
Length | 107 |
Max. P | 0.992890 |
Location | 6,933,270 – 6,933,377 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 88.39 |
Mean single sequence MFE | -33.30 |
Consensus MFE | -26.48 |
Energy contribution | -26.40 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.17 |
Mean z-score | -2.76 |
Structure conservation index | 0.80 |
SVM decision value | 2.36 |
SVM RNA-class probability | 0.992890 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6933270 107 - 22224390 CACCUUAAGGCAAAGGA-GGUUUUGCAGAAUUUCACGGUUGAAUAUAACUGGGGGAUCGUUUUGAG-GGUCAGUCUAAGUUAUAUUCGUCGAGAAACUGCAAAAUCGUC ..((((......)))).-((((((((((..((((.((((.(((((((((((((.((((........-))))..))).)))))))))))))).))))))))))))))... ( -34.70) >DroSec_CAF1 18365 108 - 1 CACCUUAAGGCGAAGGG-GGUUUUGUAGAAUUUUACGGUUGAAUAUAACUGGGGGAUCGUUUGAAGGGGUCAGUCUAAGUUAUAUUCUCCAAGAAACUGCAAAAUCGUC ..((((......)))).-((((((((((..((((..((..(((((((((((((.((((.(.....).))))..))).)))))))))).))..))))))))))))))... ( -31.60) >DroSim_CAF1 16939 107 - 1 CACCUUAAGGCAAAGGG-GGUUUUGCAGAAUUUUACGGUUGAAUAUAACUGGGGGAUCGUUUGAAG-GGUCAGUCUAAGUUAUAUUCUCCAAGAAACUGCAAAAUCGUC ..((((......)))).-((((((((((..((((..((..(((((((((((((.((((........-))))..))).)))))))))).))..))))))))))))))... ( -33.50) >DroEre_CAF1 26660 106 - 1 CAUCUUAAGGCAAACGG-GGUUUUGCAGUAUU-UACGGUUGAAUAUAACUGAGGGAUCGUUUGAAG-GGUCAGGCUACGUUAUAUUCUCCAAGAAUCUGCAGAAUCUCC ...............((-((((((((((.(((-(..((..(((((((((.((....))((((((..-..))))))...))))))))).))..)))))))))))))))). ( -33.70) >DroYak_CAF1 19118 107 - 1 CAUCUUAUGGCAAAUGGGGGUUUUGCAGUAUU-UGCGGUUGAAUAUAACUGAGGGAUCGUUUAAAG-GGUCAGGCUGUGUUAUAUUCUCCAAGAAACUGCAAAAUCUUU ...(((((.....)))))(((((((((((.((-(..((..(((((((((..((.((((........-))))...))..))))))))).)).))).)))))))))))... ( -33.00) >consensus CACCUUAAGGCAAAGGG_GGUUUUGCAGAAUUUUACGGUUGAAUAUAACUGGGGGAUCGUUUGAAG_GGUCAGUCUAAGUUAUAUUCUCCAAGAAACUGCAAAAUCGUC ..((((......))))..((((((((((..((((..((..((((((((((.((.((((.........))))...)).)))))))))).))))))..))))))))))... (-26.48 = -26.40 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:29 2006