Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,933,149 – 6,933,244 |
Length | 95 |
Max. P | 0.587632 |
Location | 6,933,149 – 6,933,244 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 81.05 |
Mean single sequence MFE | -17.53 |
Consensus MFE | -9.43 |
Energy contribution | -11.16 |
Covariance contribution | 1.73 |
Combinations/Pair | 1.10 |
Mean z-score | -1.98 |
Structure conservation index | 0.54 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.587632 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6933149 95 - 22224390 AAAUCCACUAAUGGUUUUCUCAUUUAAAUUAAGCCUAAGUCUUAAGCUAAUUUGCACACGAGACAGUUUACUGUACUCUGCAGCAAGUUUUCAAA ......(((...(((((.............)))))..))).....(..(((((((.((.(((((((....)))).)))))..)))))))..)... ( -17.42) >DroSec_CAF1 18245 95 - 1 AGACCCACCAAUGGUUUUCUCAUUCAAAUUAAACCUAAGUCCUUAGCUAAUUUGCACACGAGACAGUUUACUGUACUCUGCAGCAAGUUUUCAAA ............(((((.............)))))..........(..(((((((.((.(((((((....)))).)))))..)))))))..)... ( -16.72) >DroSim_CAF1 16818 95 - 1 AGAACCACUAAUGGUUUUCUCAUUCAAAUUAAACCUAGGUCUUUAGCUAAUUUGCACACGAGACAGUUUACUGUACUCUGCAGCAAGUUUUCAAA (((((((....)))))))...........................(..(((((((.((.(((((((....)))).)))))..)))))))..)... ( -18.70) >DroEre_CAF1 26553 80 - 1 UGAAUAUUUAAUGGUUUUCUCAUUAAAAUUAAACCUAAGUCUUAUGACUUACUGCA---------------UGUACUCUGCAGCAAGUUUUUAAA ......((((((((.....))))))))...((((.((((((....))))))(((((---------------.......)))))...))))..... ( -14.60) >DroYak_CAF1 18995 95 - 1 CAAACCAAUAAUGGUUUUCUCCUUAAAAUUAAACCUAAGUCUUAUGAUAAUUUGCAAACGAGACAGUUUACUGUACUCUGCAGCAAGUUCUCAGA .((((((....))))))...........................(((.(((((((....(((((((....)))).)))....))))))).))).. ( -20.20) >consensus AGAACCACUAAUGGUUUUCUCAUUAAAAUUAAACCUAAGUCUUAAGCUAAUUUGCACACGAGACAGUUUACUGUACUCUGCAGCAAGUUUUCAAA ............(((((.............)))))..........(..(((((((....(((((((....)))).)))....)))))))..)... ( -9.43 = -11.16 + 1.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:28 2006