Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,931,541 – 6,931,652 |
Length | 111 |
Max. P | 0.999323 |
Location | 6,931,541 – 6,931,652 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 94.95 |
Mean single sequence MFE | -29.88 |
Consensus MFE | -26.42 |
Energy contribution | -27.22 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -2.54 |
Structure conservation index | 0.88 |
SVM decision value | 3.51 |
SVM RNA-class probability | 0.999323 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6931541 111 + 22224390 CAAAUGCAUAUCUCGCGAAAAAUCGUUAGUUCUUUGAAUUUC--AUUGGUUAGAUUUAAGGGCGUGCUUGAAACUCGAGUGCAGCGAUUUUGAAUUGGAUUUGAUUUUUGAU-U ((((..((.((((.....(((((((((.((.((((((((((.--.......))))))))))))(..((((.....))))..)))))))))).....)))).))...))))..-. ( -29.30) >DroSec_CAF1 16625 113 + 1 CAAAUGCAAAUCUCGCGAAAAAUCGUUAGUUCUUUGAAUUUCACAUUGGUAAGAUUUAAGGGCGUGCUUGAAACUCGAGUGCAGCGAUUUUGAAUAGUAUUUGAUUUUUGAU-U ((((..(((((((.....(((((((((.((.((((((((((.((....)).))))))))))))(..((((.....))))..))))))))))....)).)))))...))))..-. ( -30.30) >DroSim_CAF1 15221 113 + 1 CAAAUGCAAAUCUCGCGAAAAAUCGUUAGUUCUUUGAAUUUCACAUUGGUUAGAUUUAAGGGCGUGCUUGAAACUCGAGUGCAGCGAUUUUGAAUUGUAUUUGAUUUUUGAU-U (((((((((.((......(((((((((.((.((((((((((.((....)).))))))))))))(..((((.....))))..)))))))))))).))))))))).........-. ( -32.40) >DroEre_CAF1 24969 110 + 1 CAAAUGCAAAUCUCCCGAAAAAUCGUUACUUCAUUGAAUUUC--AUUGGUUAGAUUUAAGGGCGUGCUUGAAACUCGAGUGCAGCGAUUUUGAAUUGUAUUUGAUUUUUGAU-- (((((((((.((.(((...(((((...(((....((.....)--)..)))..)))))..))).(..((((.....))))..).........)).))))))))).........-- ( -27.30) >DroYak_CAF1 17329 112 + 1 CAAAUGCAAAUCUCCCGAAAAAUCGUUAAUUCUUUGAAUUUC--AUUGGUUAGAUUUAAGGGCGUGCUUGAAACUCGAGUGCAGCGAUUUUGAAUUGUAUUUGAUUGUUGAUAU (((((((((.((......(((((((((...(((((((((((.--.......))))))))))).(..((((.....))))..)))))))))))).)))))))))........... ( -30.10) >consensus CAAAUGCAAAUCUCGCGAAAAAUCGUUAGUUCUUUGAAUUUC__AUUGGUUAGAUUUAAGGGCGUGCUUGAAACUCGAGUGCAGCGAUUUUGAAUUGUAUUUGAUUUUUGAU_U (((((((((.((......(((((((((...(((((((((((..........))))))))))).(..((((.....))))..)))))))))))).)))))))))........... (-26.42 = -27.22 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:27 2006