Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,929,732 – 6,929,840 |
Length | 108 |
Max. P | 0.917885 |
Location | 6,929,732 – 6,929,840 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 75.34 |
Mean single sequence MFE | -13.79 |
Consensus MFE | -10.30 |
Energy contribution | -10.47 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -1.35 |
Structure conservation index | 0.75 |
SVM decision value | 1.12 |
SVM RNA-class probability | 0.917885 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6929732 108 - 22224390 ACAGAGGUAGAUCAAUUAAAUCACAGCAACGCUUCCAAAACUCGCAUCCCUAUUUCGAUGCUAAAAAGUUUAUCUGAAAUACAAAUAUCCAGAAACGA-------AUACAA----GAUG ......(((..(((..(((((...(((...)))..........(((((........)))))......)))))..)))..)))................-------......----.... ( -12.00) >DroPse_CAF1 14670 108 - 1 ACAGAGGUAGAUUAAUAAAGUCACAGCAACGCUUCCAAAAAACGCAUCCCUAUUUCGAUGCGCAAAAGUUUAUCUAAAAAAAAAA--GCAAAGAAGGAACCAUCAACACA--------- ...(((((.((((.....))))...........(((......((((((........)))))).....((((............))--))......)))))).))......--------- ( -16.00) >DroWil_CAF1 18621 98 - 1 AUAGAGGUAGAUCAUUAAAAUCACAGCAACGCUUCCAAAAAACGCAUCCAUAUUUUGAUGCGCAAAAGUUUAUCUAAAAAAAAA----------CACA-------ACACAA----CAAC ....((((((((............(((...))).........((((((........)))))).....)))))))).........----------....-------......----.... ( -12.70) >DroMoj_CAF1 18344 96 - 1 ACAGAGGUAGAUCAUUAAAAUCACAACAGCGCUUCCAAAAAACGCAUCCCUACUUUGAUGCACAAAAGUUUAUCUAAAACAAA------------AGA-------AAACAA----AACU ...(((((......................)))))........(((((........)))))......((((.(((........------------)))-------))))..----.... ( -10.15) >DroAna_CAF1 13791 102 - 1 ACAGAGGUAGAUCAAUAAAAUCACAGCAACGCUUCCAAAAAUCGCAUCCCUAUUUCGAUGCGAAAAAGUUUAUCUAA----------UCGAGAACAGA-------AUACAGAGAAAAAA ...((..(((((.(((........(((...)))........(((((((........)))))))....))).))))).----------)).........-------.............. ( -15.20) >DroPer_CAF1 14691 112 - 1 ACAGAGGUAGAUUAAUAAAGUCACAGCAACGCUUCCAAAAAACGCAUCCCUAUUUCGAUGCGCAAAAGUUUAUCUAAAAA-AAAA--GCAAAGAAGGAACCAUCAACACAA----CCAC .....(((.((((.....))))........(.((((......((((((........)))))).....((((.........-..))--))......)))).).........)----)).. ( -16.70) >consensus ACAGAGGUAGAUCAAUAAAAUCACAGCAACGCUUCCAAAAAACGCAUCCCUAUUUCGAUGCGCAAAAGUUUAUCUAAAAAAAAA____C_A__AAAGA_______ACACAA____AAAC ....((((((((............(((...)))..........(((((........)))))......))))))))............................................ (-10.30 = -10.47 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:22 2006