Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,929,088 – 6,929,190 |
Length | 102 |
Max. P | 0.615402 |
Location | 6,929,088 – 6,929,190 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 81.48 |
Mean single sequence MFE | -13.67 |
Consensus MFE | -12.43 |
Energy contribution | -11.77 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.23 |
Mean z-score | -0.61 |
Structure conservation index | 0.91 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.615402 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6929088 102 - 22224390 CAA---CAGAACUCACAACUACACACACACACAUA--CACAAAACCAGGCGAAACGGUAAACUAGCACUUCAA----AGUUCGCGUAAAAGUGUUAGUCAAAAACCAUUUU ...---.............................--..................(((..((((((((((...----.(....)....)))))))))).....)))..... ( -13.10) >DroSim_CAF1 12773 98 - 1 CAA---CAGAACACACAACUACACACACACA------CACAAAACCAGGCGAAUCGGUAAACUAGCACUUCAA----GGUUCGCGUAAGAGUGUUAGUCGAAAACCAUUUU ...---.........................------..........((....(((....((((((((((..(----.(....).)..)))))))))))))...))..... ( -14.20) >DroEre_CAF1 22521 111 - 1 UAACAACAGAACACACAAAUACACACACACACAAACACAAAGAACCAAGCAUACCGGUAAACUAGCACUUGAAGAAAAGUUCGCGUAGGAGUGUUGGUCAAAAGCCAUUUU .........(((((.(...(((.....................(((.........)))......((((((......))))..))))).).)))))(((.....)))..... ( -13.70) >consensus CAA___CAGAACACACAACUACACACACACACA_A__CACAAAACCAGGCGAAACGGUAAACUAGCACUUCAA____AGUUCGCGUAAGAGUGUUAGUCAAAAACCAUUUU .......................................................(((..((((((((((..................)))))))))).....)))..... (-12.43 = -11.77 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:22 2006