Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,918,197 – 6,918,289 |
Length | 92 |
Max. P | 0.979951 |
Location | 6,918,197 – 6,918,289 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 73.97 |
Mean single sequence MFE | -18.11 |
Consensus MFE | -10.03 |
Energy contribution | -9.67 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.20 |
Mean z-score | -2.19 |
Structure conservation index | 0.55 |
SVM decision value | 1.85 |
SVM RNA-class probability | 0.979951 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6918197 92 + 22224390 A--AAGGAACCCAAAA-------CAUAGCUCAAGUAAUGAGAUCAAGGUGAAAAUUGUAUAAAUAACCUUGAAGA--AGAUAUAAUUCCAAGGUGACUUGGUU .--.............-------.....((((.....)))).(((((((................)))))))...--..........(((((....))))).. ( -19.49) >DroSec_CAF1 3185 94 + 1 AAAAAGGAACCCAAAA-------CUCAACUCAAGUAAUGAGAUCAGGGCUAAAACUGUACAAAUAACCUUGAAAA--AGUUAUAAUUCCAAGGUGACUUGGUU ..............((-------((...((((.....)))).((((((..................))))))...--))))......(((((....))))).. ( -17.87) >DroSim_CAF1 2953 94 + 1 AAAAAGGAACCCAAAA-------CUCAACUCAAGUAAUGAGAUCAGGGCUAAAAUUGUACAAAUAACCUUGACAA--AGUUAAAAUUCCAAGGUGACUUGGUU .........(((....-------((((((....))..))))....))).(((..((((.(((......)))))))--..))).....(((((....))))).. ( -18.20) >DroEre_CAF1 11825 101 + 1 A--AAGUAACUCGAAACUCCAAACUAAACUCAAACAAUGAGAUCAAGGCUAAAAUUGUACGAAUAACCUUGGGAAUAAGGUUUAAUUCCAAGGUGACUUGGUU .--.........................((((.....))))((((((((.......)).......(((((((((.((.....)).)))))))))..)))))). ( -18.80) >DroYak_CAF1 3347 84 + 1 A--AG--ACUUAAAAACUUCAA--------------AUGAGAUCAAGGCUACAAAUGUACAAAUAACCUUGGAAA-AGAGUACACUUCCAAGGUGACUUCAUU .--..--..............(--------------(((((.((.....(((....)))......(((((((((.-.........))))))))))).)))))) ( -16.20) >consensus A__AAGGAACCCAAAA_______CUCAACUCAAGUAAUGAGAUCAAGGCUAAAAUUGUACAAAUAACCUUGAAAA__AGGUAUAAUUCCAAGGUGACUUGGUU ........................................(((((((((.......)).......((((((.................))))))..))))))) (-10.03 = -9.67 + -0.36)
Location | 6,918,197 – 6,918,289 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 73.97 |
Mean single sequence MFE | -19.74 |
Consensus MFE | -10.56 |
Energy contribution | -11.84 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.12 |
Mean z-score | -2.09 |
Structure conservation index | 0.54 |
SVM decision value | 1.47 |
SVM RNA-class probability | 0.956871 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6918197 92 - 22224390 AACCAAGUCACCUUGGAAUUAUAUCU--UCUUCAAGGUUAUUUAUACAAUUUUCACCUUGAUCUCAUUACUUGAGCUAUG-------UUUUGGGUUCCUU--U ..(((((....)))))..........--...(((((((................))))))).((((..((.........)-------)..))))......--. ( -15.19) >DroSec_CAF1 3185 94 - 1 AACCAAGUCACCUUGGAAUUAUAACU--UUUUCAAGGUUAUUUGUACAGUUUUAGCCCUGAUCUCAUUACUUGAGUUGAG-------UUUUGGGUUCCUUUUU ...(((((.(((((((((........--.))))))))).))))).........(((((.((.((((..........))))-------.)).)))))....... ( -23.10) >DroSim_CAF1 2953 94 - 1 AACCAAGUCACCUUGGAAUUUUAACU--UUGUCAAGGUUAUUUGUACAAUUUUAGCCCUGAUCUCAUUACUUGAGUUGAG-------UUUUGGGUUCCUUUUU ...(((((.(((((((((........--)).))))))).))))).........(((((.((.((((..........))))-------.)).)))))....... ( -20.10) >DroEre_CAF1 11825 101 - 1 AACCAAGUCACCUUGGAAUUAAACCUUAUUCCCAAGGUUAUUCGUACAAUUUUAGCCUUGAUCUCAUUGUUUGAGUUUAGUUUGGAGUUUCGAGUUACUU--U ..(((((....))))).....((((((......))))))(((((...((((((((.((.((.((((.....)))))).)).)))))))).))))).....--. ( -21.50) >DroYak_CAF1 3347 84 - 1 AAUGAAGUCACCUUGGAAGUGUACUCU-UUUCCAAGGUUAUUUGUACAUUUGUAGCCUUGAUCUCAU--------------UUGAAGUUUUUAAGU--CU--U (((((..((((((((((((........-))))))))))......(((....))).....))..))))--------------)..............--..--. ( -18.80) >consensus AACCAAGUCACCUUGGAAUUAUAACU__UUUUCAAGGUUAUUUGUACAAUUUUAGCCUUGAUCUCAUUACUUGAGUUGAG_______UUUUGGGUUCCUU__U ..(((((....)))))................((((((((............))))))))..((((.....))))............................ (-10.56 = -11.84 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:18 2006