Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,913,637 – 6,913,750 |
Length | 113 |
Max. P | 0.991733 |
Location | 6,913,637 – 6,913,750 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.50 |
Mean single sequence MFE | -34.85 |
Consensus MFE | -32.38 |
Energy contribution | -31.87 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.10 |
Mean z-score | -2.43 |
Structure conservation index | 0.93 |
SVM decision value | 2.28 |
SVM RNA-class probability | 0.991733 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6913637 113 + 22224390 -------CUUUUUGGCCAUUGGCUUCUGGCUUUUGGCCAACUGCAGCCGCAGUAUUCGCACCGAUUCCGAUGAUUACGAGUACGAUGUGCUUCGUAAACAGAAGAAAAACAAAAAAAAAA -------.....((((((..(((.....)))..))))))(((((....)))))...........(((...((.((((((((((...)))).)))))).))...))).............. ( -32.60) >DroSec_CAF1 37982 112 + 1 -------CUUUUUGGCCAUUGGCUUCUGGCUUUUGGCCAACUGCAGCCGCAGUAUUCGCACCGAUUCCGAUGACUACGAGUACGAUGUGCUUCGUAAACAGAAGAAA-ACAAAAAAAAAA -------....(((((((..(((.....)))..))))))).(((....)))(((((((((.((....)).))....)))))))..(((.((((.......))))...-)))......... ( -31.30) >DroSim_CAF1 22140 111 + 1 -------GUUUUUGGCCAUUGGCUUCUGGCUUUUGGCCAACUGCAGCCGCAGUAUUCACACCGAUUCCGAUGAUUACGAGUACGAUGUGCUUCGUAAACAGAAGAAA-ACAAAAA-AAAA -------(((((((((((..(((.....)))..))))).(((((....))))).(((.((.((....)).)).((((((((((...)))).))))))...)))))))-)).....-.... ( -34.50) >DroYak_CAF1 42065 115 + 1 UGUGUGUCGUUUUGGCCAUUGGCUUUUGGCUUUUGGCCAACUGCAGCCGCAGUAUUCGCAGCGAUUGCGAUGAUUACGAGUGCGAUGUGCUUCGUAAACGGAGCAAA-ACAAGAA----A ..((((((((..((((((..(((.....)))..))))))(((((....)))))..((((((...))))))...........))))).(((((((....)))))))..-)))....----. ( -41.00) >consensus _______CUUUUUGGCCAUUGGCUUCUGGCUUUUGGCCAACUGCAGCCGCAGUAUUCGCACCGAUUCCGAUGAUUACGAGUACGAUGUGCUUCGUAAACAGAAGAAA_ACAAAAA_AAAA ............((((((..(((.....)))..))))))(((((....)))))...........(((...((.((((((((((...)))).)))))).))...))).............. (-32.38 = -31.87 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:16 2006