Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,912,024 – 6,912,144 |
Length | 120 |
Max. P | 0.865087 |
Location | 6,912,024 – 6,912,144 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.00 |
Mean single sequence MFE | -28.38 |
Consensus MFE | -18.23 |
Energy contribution | -20.22 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.23 |
Mean z-score | -2.05 |
Structure conservation index | 0.64 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.865087 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6912024 120 + 22224390 UCAAUAAUUUUUCAAAACUUUUUUUGGCGGUGUGGCAGCACUGAUUCACUCACUGUUACCAGCUCUGUUAAGUGUCUGUUGACAACACCAACAUUGCCAAUCGAAUAUGGUAUUCGAUAU ........................(((((((((((.((((.(((.....))).)))).))............((((....))))......)))))))))((((((((...)))))))).. ( -28.90) >DroSec_CAF1 36402 120 + 1 UCAAUUACUUUUUUAAACUAUUUUUGACUGUGUGGCAACACGGUUUCACUCACUGUUACCAGCUCUGUUAAGUGUAUGUUGACAGCACCAACAGUGCCAAUCGAAAAUGGUAAUCGAUAU ................(((((((((((.((.(((....)))(((..((.....))..))).((.(((((..((((.((....)))))).))))).)))).)))))))))))......... ( -31.10) >DroSim_CAF1 20529 120 + 1 UCAAUUACUUUUUAAAACUAUUUUUGACUGUGUGGCAACACGGUUUCACUCACUGUUACCAGGUCUGUUAAGUGUAUGUUGACAGCACCAACAGUGCCAAUCGAAAAUGGUAAUCGAUAU ................(((((((((((((((((....)))))).......(((((((....((((((((((.......))))))).))))))))))....)))))))))))......... ( -33.30) >DroYak_CAF1 40271 109 + 1 UCAA--AUUUUAUAAAACUAUUUUUAGCAGUGUGGCAGCACUGAUUUUUCAACUGAUAACAGCACUGUUAAUAGUCCGUUGGCAGCACCA---------AACGAUAGCAGUAAUCGAUAU ....--..........(((((...(((((((((..(((...(((....))).)))......))))))))))))))...((((.....)))---------).((((.......)))).... ( -20.20) >consensus UCAAUUACUUUUUAAAACUAUUUUUGACUGUGUGGCAACACGGAUUCACUCACUGUUACCAGCUCUGUUAAGUGUAUGUUGACAGCACCAACAGUGCCAAUCGAAAAUGGUAAUCGAUAU ................(((((((((((((((((....)))))).......(((((((.......(((((((.......)))))))....)))))))....)))))))))))......... (-18.23 = -20.22 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:09 2006