Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,911,869 – 6,911,984 |
Length | 115 |
Max. P | 0.616214 |
Location | 6,911,869 – 6,911,984 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.57 |
Mean single sequence MFE | -22.10 |
Consensus MFE | -14.55 |
Energy contribution | -15.23 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.10 |
Mean z-score | -1.91 |
Structure conservation index | 0.66 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.616214 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6911869 115 + 22224390 GAUUUUAGAUUUGAAUACCUUAAUUGCAAAU--GUCAGCAAUGUUUUGCUGAUAAUUGUACUUAUAAGGCCUGCA--UAUAUGGU-UUCAAACUAGUUUGAACGUAACGCCUUUUCAUAA ...........((((..(((((..(((((.(--((((((((....))))))))).)))))....)))))...((.--..((((..-.(((((....))))).))))..))...))))... ( -26.40) >DroSec_CAF1 36251 112 + 1 GAUUUUAGAUUUGAAUACCUUAAUUGCAAAUUAAUUGCAAAUUUUUUACUGAUAAUUGUACUUAUAAGGCCCACAUAUAUAUUAUGUUCAAACUAG--------AAACGCCUUUCCAUGA ..((((((.(((((...(((((.((((((.....))))))......(((........)))....)))))...(((((.....))))))))))))))--------)).............. ( -18.80) >DroSim_CAF1 20383 108 + 1 GAUCUUAGAUUUGAAUACCUUAAUUUCAAAU--GUUAGCAAUUUUUUGCUGAUAAUUGUACUUAUAAGGCCU--AUAUAUAUUAUGUUCAAACUAG--------AAACGCCUUUUCAUGA ..(((.((.(((((((((((((....(((.(--((((((((....))))))))).)))......)))))...--..........))))))))))))--------)............... ( -21.11) >consensus GAUUUUAGAUUUGAAUACCUUAAUUGCAAAU__GUUAGCAAUUUUUUGCUGAUAAUUGUACUUAUAAGGCCU_CAUAUAUAUUAUGUUCAAACUAG________AAACGCCUUUUCAUGA .....(((.(((((((((((((..(((((....((((((((....))))))))..)))))....)))))...............)))))))))))......................... (-14.55 = -15.23 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:08 2006