Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,905,200 – 6,905,319 |
Length | 119 |
Max. P | 0.975921 |
Location | 6,905,200 – 6,905,319 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.43 |
Mean single sequence MFE | -24.10 |
Consensus MFE | -18.44 |
Energy contribution | -19.32 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.15 |
Mean z-score | -2.27 |
Structure conservation index | 0.77 |
SVM decision value | 1.76 |
SVM RNA-class probability | 0.975921 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6905200 119 + 22224390 GACACAGAGACACAGACACUUUAAAUAAUUAAGCACUCGA-AGGGGAUUCCUAAAUUAUCAGAGAUCUUCAAGUAGAACUGUCAGUGCUUAAUUAAAUUUGAAGAAGCUAAACAGAUUUG .............((...(((((((((((((((((((.((-.((((((..((........))..)))))).((.....)).))))))))))))))..)))))))...))........... ( -26.10) >DroSec_CAF1 29612 111 + 1 --------GACACAGACACUUUAAAUAAUUAAGCACUCAA-AGGGGAUUCCUAAAUUAUCACAGAUCUCCAAGUAGAUCUGUCUGUGCUUAAUUAAAUUUGAAGGAGCUAAACAGAUUCG --------.....((...((((((((((((((((((....-.(((....)))........((((((((......))))))))..)))))))))))..)))))))...))........... ( -29.30) >DroEre_CAF1 28701 108 + 1 --------GACA---GCACUUUAAAUAAAAAUGCACUCAAAAGGGGAUUCUUAAAUUAUCACGGAUCUCCAAGUAGAUGUUUCAGUUC-UAAUCAAAUUAGAAGGAGCUAAUCAGUUUUG --------....---(((.(((.....))).)))...(((((((((((((............)))))))).....((((((((..(((-((((...))))))))))))..)))..))))) ( -20.20) >DroYak_CAF1 33298 108 + 1 --------GACA---ACACUUUAAAUAAUUAAGCACUCAA-AGCGGAUUCUUAAAUUAUCACAAAUCUGCAAGCAGAUCUUUCAGUGCUUAAUUUAAUUUACAGCAGCUACAGAGAUUUA --------....---...((.((((((((((((((((.((-((..(((.........)))....(((((....))))))))).)))))))))))..))))).))................ ( -20.80) >consensus ________GACA___ACACUUUAAAUAAUUAAGCACUCAA_AGGGGAUUCCUAAAUUAUCACAGAUCUCCAAGUAGAUCUGUCAGUGCUUAAUUAAAUUUGAAGGAGCUAAACAGAUUUG ..................((((((((((((((((((......(((((((..............))))))).....((....)).))))))))))..))))))))................ (-18.44 = -19.32 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:07 2006