Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,900,890 – 6,900,985 |
Length | 95 |
Max. P | 0.883200 |
Location | 6,900,890 – 6,900,985 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.77 |
Mean single sequence MFE | -27.72 |
Consensus MFE | -18.30 |
Energy contribution | -18.46 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.35 |
Mean z-score | -1.76 |
Structure conservation index | 0.66 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.883200 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6900890 95 + 22224390 ----------------UGCGGAAGGAGAUUCGGUCCAA--AAAAAGGGACUGGGUGUCAUGGAUUGGCCA-------UUUUGGAAGGCAAGAAUGUAAAUGACGCCAUAAUUGCACACAU ----------------(((((.........((((((..--......))))))((((((((..((..(((.-------........)))......))..))))))))....)))))..... ( -28.00) >DroVir_CAF1 54576 112 + 1 GUCAGAGGCCGCAGCAGGGCGAAGGCGAAUGGUACCAG--AAAGGGGG----GGUGCUGUGGCGGGGCAAUCAUUCUAU-UUCAAGGCAA-AAUGUAAAUGACGCCAUAAUUGCAGUCAU (((....(((((((((..((....))........((..--....))..----..)))))))))((((......))))..-.....)))..-.......(((((((.......)).))))) ( -29.40) >DroSec_CAF1 25282 93 + 1 ----------------UGUGGAUGGAGAUUUGGUCCAA--AA-CGGGGGCUAGGUGUCAUGGAUUGGCCA-------UU-UGGAAGGCAGGAAUGUAAAUGACGCCAUAAUUGCACACAU ----------------((((..........((((((..--..-...))))))((((((((..((..(((.-------..-.....)))......))..)))))))).........)))). ( -27.10) >DroEre_CAF1 24518 93 + 1 ----------------UGUGGU-GGAGAUUUGGUCCAA--AAAGGGGGGCUGGGUGUCAUGGAUUGGCCA-------UU-UGGAAGGCAAGAAUGUAAAUGACGCCAUAAUUGCACACAU ----------------(((((.-.(......(((((..--......))))).((((((((..((..(((.-------..-.....)))......))..))))))))....)..).)))). ( -28.30) >DroYak_CAF1 28556 96 + 1 ----------------UGUGGAAGGAGAUUUGGUCCAGAGAAAAGGGGGCUGGGUGUCAUGGAUUGGCCA-------UU-UGGAAGGCAAGAAUGUAAAUGACGCCAUAAUUGCACACAU ----------------((((.((........(((((..........))))).((((((((..((..(((.-------..-.....)))......))..))))))))....)).))))... ( -25.80) >consensus ________________UGUGGAAGGAGAUUUGGUCCAA__AAAAGGGGGCUGGGUGUCAUGGAUUGGCCA_______UU_UGGAAGGCAAGAAUGUAAAUGACGCCAUAAUUGCACACAU .................(((..........((((((..........))))))((((((((......(((................)))..........)))))))).........))).. (-18.30 = -18.46 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:06 2006