Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,895,740 – 6,895,833 |
Length | 93 |
Max. P | 0.757829 |
Location | 6,895,740 – 6,895,833 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.90 |
Mean single sequence MFE | -21.70 |
Consensus MFE | -14.43 |
Energy contribution | -15.30 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.10 |
Mean z-score | -1.86 |
Structure conservation index | 0.66 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.757829 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6895740 93 + 22224390 AAGACCAACAGGUUAAAUCUGAAAA---AGUGCAAUUUUAAUGGCA-ACGUGCUUCGAUUGCCACCGCAAACAUUUUGCCGC-------UUAGCACAUUUU----------------UCG ..((((....))))......(((((---(((((........(((((-(((.....)).))))))..((((.....))))...-------...)))).))))----------------)). ( -25.20) >DroSec_CAF1 20065 94 + 1 AAGACCAACAGGUUAAAUCUGAAAA---AGUGAAAUUUUAAUGGCAAACGUGCUUCGAUUGCCACCGCAAACAUUUUGCCGC-------UUAGCAUAUUUU----------------CCG ..........((..((((.((...(---((((.........((((((.((.....)).))))))..((((.....)))))))-------))..)).)))).----------------)). ( -19.80) >DroEre_CAF1 19433 93 + 1 AAAACCAACAGGUUAAAUCUCAAAAA----UGAAAUUUUAAUGGCAAACGUGCUUCGAUUGCCAACGCAAACAUUUUGCCGC-------CUAGCAUAUUUU----------------CCG .........((((.............----...........((((((.((.....)).))))))..((((.....)))).))-------))..........----------------... ( -15.50) >DroYak_CAF1 22856 120 + 1 AAAACCAACAGGUUAAAUCUGAAAAAAAAGUGCACUUUUAAUGGCAAACGUGCUUCGAUGGCCACCGCAAACAUUUUGCCACUUGCCACUUGGCAUAUUUUCCAAUUUUCUUAUUUUCCG ..........((..((((..((((((((((....)))))..(((.(((..((((..(.((((....((((.....)))).....)))))..))))..))).))).)))))..)))).)). ( -26.30) >consensus AAAACCAACAGGUUAAAUCUGAAAA___AGUGAAAUUUUAAUGGCAAACGUGCUUCGAUUGCCACCGCAAACAUUUUGCCGC_______UUAGCAUAUUUU________________CCG ..((((....))))...............((((........((((((.((.....)).))))))..((((.....)))).............))))........................ (-14.43 = -15.30 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:03 2006