Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 859,563 – 859,656 |
Length | 93 |
Max. P | 0.900330 |
Location | 859,563 – 859,656 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 73.51 |
Mean single sequence MFE | -20.10 |
Consensus MFE | -12.36 |
Energy contribution | -13.24 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.13 |
Mean z-score | -1.79 |
Structure conservation index | 0.61 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.900330 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 859563 93 + 22224390 GCCCCCCCCCCCCCCCCCA---AAACAC-CAGUGGGCAGC---GAAAGUGUUCAGCACCUGCUCCACUUGUCAGCACCUCGUUCAAGGACACCACCCCCU-- ...................---......-..((((...((---..(((((...(((....))).)))))....)).(((......)))...)))).....-- ( -17.00) >DroSec_CAF1 62399 96 + 1 GCCCCCCGCCCCUCCCCCAUUCCAACAA-AAGUGGGCAGC---AAAAGUGGGCAGCACCUGCUCCACUUGUCAGCACCUCGUCCAAGGACAUCAGCCCCU-- ............................-.((.((((.((---..((((((((((...)))).))))))....)).....(((....)))....))))))-- ( -27.30) >DroSim_CAF1 58589 94 + 1 ACCCCCCUCCCCACCC---UUCCAACAACAAGUGGGCAGC---AAAAGUGGGCAGCACCUGCUCCACUUGUCAGCACCUCGUCCAAGGACAUCAGCCCCU-- ................---...........((.((((.((---..((((((((((...)))).))))))....)).....(((....)))....))))))-- ( -27.30) >DroEre_CAF1 65590 80 + 1 GC------------CCCCA---AAACAC-CAGA----ACCGAAAAAAGUGGGCAGCACCUGCUCCACUCGUCAGCACCUCGUCCAAGGACACCACCUCCU-- ..------------.....---......-....----...((....(((((((((...)))).)))))..))........(((....)))..........-- ( -16.10) >DroYak_CAF1 61805 79 + 1 GC------------CCCCA---AAUCGC-CAAA----CCC---AAAAGUGGGCAGCACCUGCUCCAUUCGUCAGCACCUCGUCCAAGGACACCACCUCCCCU ..------------.....---......-....----...---....((((((((...))))..................(((....))).))))....... ( -12.80) >consensus GCCCCCC_CCCC_CCCCCA___AAACAC_CAGUGGGCAGC___AAAAGUGGGCAGCACCUGCUCCACUUGUCAGCACCUCGUCCAAGGACACCACCCCCU__ ......................................((.....((((((((((...)))).))))))....)).....(((....)))............ (-12.36 = -13.24 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:08 2006