Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,892,314 – 6,892,431 |
Length | 117 |
Max. P | 0.812103 |
Location | 6,892,314 – 6,892,431 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 79.29 |
Mean single sequence MFE | -19.91 |
Consensus MFE | -14.36 |
Energy contribution | -14.98 |
Covariance contribution | 0.63 |
Combinations/Pair | 1.10 |
Mean z-score | -1.79 |
Structure conservation index | 0.72 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.812103 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6892314 117 - 22224390 UUUAACCCCUUCAAGGGCAUAAAAAUGCAUCUGGGAAUAACUCCCUAACCCUUU-UCUAUUUUCCAAUGCGUAUUCCCCGUAUGCAAAUCAACCCUUUUUUUCUUUUUGCACUGCGCA ((((..(((.....)))..)))).((((((.((((((.................-.....))))))))))))......((((((((((.................)))))).)))).. ( -20.78) >DroSec_CAF1 16658 117 - 1 UUUAACCCCUUCAAGGGCAUAAAAAUGCAUCUGGGAAUAUCUCCCUAACCCUUUUUUUAUUUUCCAGUGUGUAUUCCCCGUAUGCAAAUCAAGCGUU-UUCCCUUUUUCCACUGCACA ............(((((....(((((((..(((((((.......................)))))))(((((((.....)))))))......)))))-)))))))............. ( -20.60) >DroEre_CAF1 16124 112 - 1 UUUAACCCCUUC-AGGGCAUAAAAAUGCAUCUGGGAAUAUUUC-CUAACCCUU--UCUAUUUUCAAAUGUGUAUUUCCCGCAUGCAAAUCAAGCGUU-UUCC-CUUUUGCGCUGCACA ((((..(((...-.)))..))))..(((((.((((((......-.........--...................)))))).))))).....(((((.-....-.....)))))..... ( -20.98) >DroYak_CAF1 19180 94 - 1 UUUAAACCCUUCGAGGGCAUAAAAAUGCAUUUGGGAAUAUUUCGCUAGCCCUU--UCUAUUUUCCCAUG----UUCCCCGCAUGCAAAUCAGCCGUU-UUU----------------- ((((..(((.....)))..))))..(((((..((((((((.....(((.....--.))).......)))----)))))...)))))...........-...----------------- ( -17.30) >consensus UUUAACCCCUUCAAGGGCAUAAAAAUGCAUCUGGGAAUAUCUCCCUAACCCUU__UCUAUUUUCCAAUGUGUAUUCCCCGCAUGCAAAUCAACCGUU_UUCC_UUUUUGCACUGCACA ((((..(((.....)))..))))..((((((.((((((((..............................)))))))).).)))))................................ (-14.36 = -14.98 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:58 2006