Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,890,974 – 6,891,194 |
Length | 220 |
Max. P | 0.994687 |
Location | 6,890,974 – 6,891,075 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 80.31 |
Mean single sequence MFE | -19.88 |
Consensus MFE | -15.55 |
Energy contribution | -15.55 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.87 |
Structure conservation index | 0.78 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.882227 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6890974 101 - 22224390 CAA--------UUCCCCAAAUACCCCAAUUCUCCACUCGGAGUUUUGAUGCU----GGCA--CUGGCACGCAUCAAAUUCCCUGCUCCUUUUUACCCAGACCUCCGCCGAUUCUC ...--------..........................(((((.((((((((.----.((.--...))..))))))))....(((............)))..)))))......... ( -17.70) >DroSec_CAF1 15312 103 - 1 CAA--------UUCCCCA-AUCCCCCAAUUCUCCACUCGGAGUUUUGAUGCUGGCUGGCA--UUGGCACGCAUCAAAUUCCCUGCUCCUUUUU-CCCAGACCUCCACCGAUUCUC ...--------.......-...................(((((((((((((..(((....--..)))..))))))))......))))).....-..................... ( -18.80) >DroSim_CAF1 16012 103 - 1 CAA--------UUCCCCA-AUCCCCCAAUUCUCCACUCGGAGUUUUGAUGCUGGCUGGCA--UUGGCACGCAUCAAAUUCCCUGCUCCUUUUU-UCCAGACCUCCGCCGAUUCUC ...--------.......-..................(((((.((((((((..(((....--..)))..))))))))....(((.........-..)))..)))))......... ( -19.40) >DroYak_CAF1 17734 102 - 1 CAAUUUCCCCAAUCUCCA-AA------GUUCCUCACUUGGAGUUUUGAUGCU----GGCAGAGUGGCACGCAUCAAAUUCCCUGCUCCAGU-U-CCCGAACCUUCGCUGAUUUUC ..........((((..((-(.------((((.....((((((((((((((((----(.(.....).)).))))))))......))))))).-.-...)))).)).)..))))... ( -23.60) >consensus CAA________UUCCCCA_AUCCCCCAAUUCUCCACUCGGAGUUUUGAUGCU____GGCA__UUGGCACGCAUCAAAUUCCCUGCUCCUUUUU_CCCAGACCUCCGCCGAUUCUC ......................................(((((((((((((......((......))..))))))))......)))))........................... (-15.55 = -15.55 + -0.00)
Location | 6,891,075 – 6,891,194 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.80 |
Mean single sequence MFE | -35.31 |
Consensus MFE | -32.98 |
Energy contribution | -33.58 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.11 |
Mean z-score | -1.76 |
Structure conservation index | 0.93 |
SVM decision value | 2.50 |
SVM RNA-class probability | 0.994687 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6891075 119 + 22224390 GGGAAAUGGACAUGGCCAUCGUUCACUGAUGGAUAGUUCACUUGAUUGCAACUGGCAGCGGGGUGGCCACCAUCGAAAUUGAAAGCCAAGUAAAACAAACAA-AAAGCACAUUUCUCGUU ((((((((..(.((((..(((.....((((((...(..(((((..((((.....))))..)))))..).))))))....)))..)))).((.......))..-...)..))))))))... ( -33.20) >DroSec_CAF1 15415 119 + 1 GGGGAAUGGACAUGGCCAUCGUUCACUGAUGGAUAGUUCCCUUGAUUGGAGCUGGCAGCGGGGUUGCCACCAUCGAAAUUGAAAGCCAAGUAAAACAAACAA-AAAACACAUUUCUCGUU ((((((((....((((..(((.....((((((..((((((.......))))))((((((...)))))).))))))....)))..)))).((.......))..-......))))))))... ( -37.20) >DroSim_CAF1 16115 119 + 1 GGGGAAUGGACGUGGCCAUCGUUCACUGAUGGAUAGUUCCCUUGAUUGGAGCUGGCAGCGGGGUUGCCACCAUCGAAAUUGAAAGCCAAGUAAAACAAACAA-AAAACACAUUUCUCGUU ((((((((.((.((((..(((.....((((((..((((((.......))))))((((((...)))))).))))))....)))..)))).))...........-......))))))))... ( -37.17) >DroEre_CAF1 14820 119 + 1 GGGGAAUGGACAUGGCCAUCGUUCACUGAUGGAUAGUUCCCUUGAUUGGAGCUGGCAGCAGGGUUGCCACCAUCGAAAUUGAAAGCCAAGUAAAACAAACAG-AAAACACAUUCCUCGUU ((((((((....((((..(((.....((((((..((((((.......))))))((((((...)))))).))))))....)))..)))).((.......))..-......))))))))... ( -40.10) >DroYak_CAF1 17836 120 + 1 GGGGCAUGGACAUGGCCAUCGUUCGCUGAUGGAUAGUUGUCUUGAUUGGAGCUGGCAGCCGAGUUGCCACCAACGAAAUUGAAAGCCAAGUAAAACAAACAACAAAAUACAUUUCUCGUU ((((.(((.......((((((.....))))))...(((((.(((.((((...(((((((...))))))))))).....(((.....)))......))))))))......))).))))... ( -28.90) >consensus GGGGAAUGGACAUGGCCAUCGUUCACUGAUGGAUAGUUCCCUUGAUUGGAGCUGGCAGCGGGGUUGCCACCAUCGAAAUUGAAAGCCAAGUAAAACAAACAA_AAAACACAUUUCUCGUU ((((((((....((((..(((.....((((((..((((((.......))))))((((((...)))))).))))))....)))..)))).((.......)).........))))))))... (-32.98 = -33.58 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:57 2006