Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,887,780 – 6,887,886 |
Length | 106 |
Max. P | 0.515460 |
Location | 6,887,780 – 6,887,886 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.13 |
Mean single sequence MFE | -22.86 |
Consensus MFE | -15.03 |
Energy contribution | -14.35 |
Covariance contribution | -0.68 |
Combinations/Pair | 1.24 |
Mean z-score | -1.76 |
Structure conservation index | 0.66 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.515460 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6887780 106 - 22224390 UUCGUUUUAUAAUUUUCCAUUUCAAUUUAGAUUGGCUUUGGC--------------UGCGCUGCACUAAUUAAUGCACAUUUAUUCGCGUAAUUACGCGCAGCAUGCUACUAAUUCUUUC ..........................((((..((((....((--------------((((.((((........)))))........((((....)))))))))..))))))))....... ( -22.40) >DroSec_CAF1 12200 106 - 1 UUCGUUUUAUAAUUUUCCAUUUCAAUUUAGAUUGGCUUUGGC--------------UGGGCUGCACUAAUUAAUGCACAUUUAUCCGCGUAAUUACGCGCAGCAUGCUCCUAAUUCUUUC .............................((((((....(((--------------...(((((.(((((((.(((..........))))))))).).)))))..))).))))))..... ( -19.90) >DroSim_CAF1 12914 106 - 1 UUCGUUUUAUAAUUUUCCAUUUCAAUUUAGAUUGGCUUUGGC--------------UGGGCUGCACUAAUUAAUGCACAUUUAUCCGCGUAAUUACGCGCAGCAUGCUACUAAUUCUUUC .............................((((((...((((--------------...(((((.(((((((.(((..........))))))))).).)))))..))))))))))..... ( -21.20) >DroEre_CAF1 11461 106 - 1 UUCGUUCUAUAAUUUUCCAUUUCAAUUUAGAUUGGCUUUAGU--------------CGGCCUGCGCUAAUUAAUGCACAUUUAUCCGCGUAAUUACGCGCGGCGUGCUACCAAUUCUUUG .............................((((((...((((--------------..(((.((((((((((.(((..........))))))))).)))))))..))))))))))..... ( -24.40) >DroYak_CAF1 13470 109 - 1 -----------AUUUUCCAUUUCAAUUUAGAUUGGCUUUAGUUUGGAUUGGUACAUUGGGCUGUACUAAUUAAUGCACAUUUAUCCGCGUAAUUACGCGCAGCAGGCUGCUAAUUCUUUC -----------..................(((((((...((((((((((((((((......))))))))))..............(((((....)))))...)))))))))))))..... ( -26.40) >consensus UUCGUUUUAUAAUUUUCCAUUUCAAUUUAGAUUGGCUUUGGC______________UGGGCUGCACUAAUUAAUGCACAUUUAUCCGCGUAAUUACGCGCAGCAUGCUACUAAUUCUUUC .............................((((((...((((.................(((((.(((((((.(((..........))))))))).).)))))..))))))))))..... (-15.03 = -14.35 + -0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:52 2006