Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,884,026 – 6,884,125 |
Length | 99 |
Max. P | 0.685275 |
Location | 6,884,026 – 6,884,125 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 85.12 |
Mean single sequence MFE | -26.54 |
Consensus MFE | -18.70 |
Energy contribution | -19.82 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.08 |
Mean z-score | -1.86 |
Structure conservation index | 0.70 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.685275 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6884026 99 - 22224390 AUGUAACUUUUA-------------UUCACCAAAUAUAGCUACACUUUUGUCCCUGUGUUUGGCAUGUGAUUUGCCCUUAGCUUCGACUCAGUUGAGCUUGUGCAAAUGGCA ............-------------....((((((((((..(((....)))..))))))))))..(((.((((((.(..((((.((((...)))))))).).)))))).))) ( -28.40) >DroSec_CAF1 8224 99 - 1 GUGUAACUUUUA-------------UUCACCAAAUAUAGCUACACUUUUGUCUCUGUGUGUGGCAUGUGAUUUGCCCUUAGCUUCGACUCAGUUGAGCUUGUGCAAAUGGCA ............-------------.............(((((((............))))))).(((.((((((.(..((((.((((...)))))))).).)))))).))) ( -26.30) >DroSim_CAF1 8950 99 - 1 AUGUAACUUUUA-------------UUCACCAAAACUAGCUACACUUUUAUCUCUGUGUGUGGCACGUGAUUUGCCCUUAGCUUCGACUCAGUUGAGCUUGUGCAAAUGGCA ............-------------.............(((((((............)))))))..((.((((((.(..((((.((((...)))))))).).)))))).)). ( -26.40) >DroEre_CAF1 7941 99 - 1 AAGUCACUUCUA-------------UUCACCAAAUAUAGGUAUUCUAUUCUCUCUGUGUGUGGCAUGUGAUUUGCCCCUAGCUUCGACUCAGUUGGGCUUGGGAAAAUGGCA (((((((..(((-------------(.(((.....((((.....)))).......))).))))...)))))))((((((((((.((((...))))))).)))).....))). ( -23.80) >DroYak_CAF1 9515 112 - 1 AAGUCACUUCUACUCACCAACUAUAUUCACCAAAUAAGGCUACACUUUUGUCUCAGUGUGUGGCAUGUGACUUGCCCUUAGCUUCGACUCAGUGGAGCUUGUGAAAAUGGCA (((((((.............((.((((.....))))))(((((((............)))))))..)))))))(((...(((((((......))))))).((....))))). ( -27.80) >consensus AUGUAACUUUUA_____________UUCACCAAAUAUAGCUACACUUUUGUCUCUGUGUGUGGCAUGUGAUUUGCCCUUAGCUUCGACUCAGUUGAGCUUGUGCAAAUGGCA ......................................(((((((............)))))))..((.((((((.(..((((.((((...)))))))).).)))))).)). (-18.70 = -19.82 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:49 2006